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| Welcome to BioUML world |
BioUML is open source integrated Java platform for building virtual cell and
virtual physiological human. It spans the comprehensive range of capabilities including access to databases
with experimental data, tools for formalized description of biological
systems structure and functioning, as well as tools for their visualization,
simulation, parameters fitting and analyses. Due to scripts (R, JavaScript)
and workflow support it provides powerful possibilities for analyses of
high-throughput data. Plug-in based architecture (Eclipse run time from IBM is
used) allows to add new functionality using plug-ins.
BioUML consists of 3 parts:
- BioUML server - provides access to data and analyses methods installed on the server side
for BioUML clients (workbench and web edition) via the Internet.
- BioUML workbench - Java application that can work standalone or as
"thick" client for BioUML server.
- BioUML web edition - "thin" client for BioUML server (you just
need to start web browser) that
provides most of functionality of BioUML workbench. It uses AJAX and HTML5
<canvas> technology for visual modeling and interactive data editing.
See also:
- Report
"BioUML - integrated platform for building virtual cell and virtual
physiological human",
presented on BGRS\SB-2010
conference (77 slides,8.4 Mb).
- Introduction to BioUML workbench
- describes main features and concepts of BioUML workbench: visual modeling, meta-model,
formal definition of graphic notations and plug-in based architecture.
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BioUML tutorial
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October 10, 8.30-12.30 a.m - tutorial
"BioUML - integrated platform for building virtual cell and virtual physiological human"
on ICSB 2010 conference.
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SBML tests passed 100%
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BioUML version 0.9.0 have passed all tests from SBML test suite version 2.0 (SBML L1v2, L2v1-4, L3v1)
Test details.
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Development roadmap was updated
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It outlines of the future releases that the BioUML project hopes to accomplish.
More...
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Demo - flash movies
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We have created 7 flash movies that demonstrate main BioUML features.
Movies
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Have questions?
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If you have any questions please contact us at
info@Biosoft.Ru
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