Package biouml.standard.type

Interface Summary
Base	General interface to be implemented by all classes to be used as BioUML diagram elements.
LocalisedString
ProteinProperties	Defines protein properties constants.
Relation	Intermediary class to generalize what is common for all relations/edges as well as to define common constants.
SpeciesSpecific	General interface for species specific entities.
Type	Definition of data elemnt types (roles).

 

Class Summary
BaseSupport	Base class for all data element types.
Biopolymer
BiopolymerBeanInfo	Utility class containing common metada for all molecules.
Cell	Stub
CellBeanInfo	Utility class containing common metada for all molecules.
Compartment	Stub
CompartmentBeanInfo
Concept
ConceptBeanInfo
ConceptBeanInfo.ConceptTypeEditor
Constant	Some constant that can be used in kinetic or other equations.
ConstantBeanInfo
DatabaseInfo	Many data elements can refer to other databases through its database references field.
DatabaseInfoBeanInfo
DatabaseReference	General defintion of reference to external database.
DatabaseReferenceBeanInfo
DiagramInfo	Defines common properties for diagram description.
DiagramInfoBeanInfo
DiagramReference
EditionHistory	General class defining editing history.
EditionHistory.Edition
ElementBeanInfo.RoleEditor
Function	Molecular function is an activity or task performed by a gene product or other biological entity.
FunctionBeanInfo
Gene	Stub
GeneBeanInfo
GenericEntity
GenericEntityBeanInfo	Utility class containing common metada for all generic entities.
ImageDescriptor
ImageDescriptorBeanInfo
KineticLaw
KineticLawBeanInfo	Utility class containing common metada for all generic entities.
KineticType	Definition of KinetReactionType defines: - meta information about reaction
KineticType.Element	This class is used to specify roles for each element in kinetic function.
KineticType.ElementBeanInfo
KineticTypeBeanInfo	Utility class containing common metada for all generic entities.
LiteratureReference	Defines coomon properties of literature reference.
LiteratureReferenceBeanInfo
MessageBundle
Molecule
MoleculeBeanInfo	Utility class containing common metada for all molecules.
MultiLineHtmlFieldEditor
Process	Biological process is a biological goal that requires more than one function.
ProcessBeanInfo
Protein	Stub
ProteinBeanInfo
ProteinBeanInfo.FunctionalStateEditor
ProteinBeanInfo.ModificationEditor
ProteinBeanInfo.StructureEditor
Reaction
ReactionBeanInfo
Referrer	Extention of GenericEntity that contains references to other databases and literature sources.
ReferrerBeanInfo
ReferrerBeanInfo.LiteratureReferencesEditor
RelationType	Unit to specify kinetic constat, parameter or variable units.
RNA	Stub
RNABeanInfo
RNABeanInfo.RnaTypeEditor
SemanticRelation	SemanticRelatio specified semantic relationships between concepts (kernels) assotiated with two nodes on the diagram.
SemanticRelationBeanInfo
SemanticRelationBeanInfo.ParticipationTypeEditor
SpecieReference	SpecieReference specifies role of molecule involved in the Reaction.
SpecieReferenceBeanInfo
SpecieReferenceBeanInfo.ModifierActionEditor
SpecieReferenceBeanInfo.SpecieReferenceEditor
Species	General definition for 'Species' concept.
State	State, stage or variant of biological system or its subunits.
StateBeanInfo
Stub
Stub.Note
Stub.NoteBeanInfo
Stub.NoteLink
Stub.NoteLinkBeanInfo
Substance	Stub
SubstanceBeanInfo
Unit	Unit to specify kinetic constat, parameter or variable units.
UnitBeanInfo