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biouml.standard.diagram
Class PathwayDiagramViewBuilder

biouml.model.DefaultDiagramViewBuilder
  |
  +--biouml.standard.diagram.PathwayDiagramViewBuilder

Direct Known Subclasses:: GeneNetworkDiagramType.GeneNetworkDiagramViewBuilder, MetabolicPathwayDiagramType.MetabolicPathwayDiagramViewBuilder, PathwaySimulationDiagramViewBuilder, SemanticNetworkDiagramType.SemanticNetworkDiagramViewBuilder

public class PathwayDiagramViewBuilder
extends DefaultDiagramViewBuilder

Default implementation of DiagramViewBuilder.

Method Summary
`DiagramViewOptions`	`createDefaultDiagramViewOptions()`
`CompositeView`	`createDiagramView(Diagram diagram, Graphics g)`
`CompositeView`	`createEdgeView(Edge edge, DiagramViewOptions viewOptions, Graphics g)`
`CompositeView`	`createEquivalentNodeGroupView(EquivalentNodeGroup group, DiagramViewOptions options, Graphics g)`
`CompositeView`	`createNodeView(Node node, DiagramViewOptions options, Graphics g)`
`void`	`createReactionTitles(Compartment compartment, DiagramViewOptions diagramOptions, Graphics g)`
`CompositeView`	`createSemanticRelationView(Edge edge, PathwayDiagramViewOptions viewOptions, Graphics g)`
`void`	`locateReaction(Node reactionNode, DiagramViewOptions options, Graphics g)` Locate reaction.

Methods inherited from class biouml.model.DefaultDiagramViewBuilder

calcAttachmentPoints, createCompartmentView, getIcon, hideElement, isReaction, moveNode, proportion, removeElement

Method Detail

createDefaultDiagramViewOptions

public DiagramViewOptions createDefaultDiagramViewOptions()

createDiagramView

public CompositeView createDiagramView(Diagram diagram, Graphics g)

createEdgeView

public CompositeView createEdgeView(Edge edge, DiagramViewOptions viewOptions, Graphics g)

pending high take initial ports into account

createEquivalentNodeGroupView

public CompositeView createEquivalentNodeGroupView(EquivalentNodeGroup group, DiagramViewOptions options, Graphics g)

createNodeView

public CompositeView createNodeView(Node node, DiagramViewOptions options, Graphics g)

createReactionTitles

public void createReactionTitles(Compartment compartment, DiagramViewOptions diagramOptions, Graphics g)

createSemanticRelationView

public CompositeView createSemanticRelationView(Edge edge, PathwayDiagramViewOptions viewOptions, Graphics g)

locateReaction

public void locateReaction(Node reactionNode, DiagramViewOptions options, Graphics g)

Locate reaction.