Uses of Node in biouml.model

 

Subclasses of Node in biouml.model
class	Compartment           General definition of the compartment as a container for nodes and edges between them.

 

Constructors in biouml.model with parameters of type Node

Edge.Edge(DataCollection parent, Base kernel, Node input, Node output)

Edge.Edge(DataCollection parent, String id, Base kernel, Node input, Node output)

 

Methods in biouml.model that return Node
Node	Compartment.findNode(String id)
Node	Edge.getInput()
Node	Edge.getOutput()
Node	EquivalentNodeGroup.getRepresentative()

 

Methods in biouml.model with parameters of type Node
CompositeView	DefaultDiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)
void	DefaultDiagramViewBuilder.moveNode(Node node, Point newLocation)
Dimension	DefaultSemanticController.move(Node node, Compartment newParent, Dimension offset)           Moves the specified diagram node to the specified position.
void	DefaultSemanticController.moveEdges(Node oldNode, Node newNode)
void	DefaultSemanticController.moveNode(Node oldNode, Node newNode)
CompositeView	DiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)
void	DiagramViewBuilder.moveNode(Node node, Point newLocation)
NodeInfo[]	QueryEngine.addLinked(Diagram diagram, Node start, NodeInfo[] nodeInfoArr)
NodeInfo[]	QueryEngine.searchLinked(Diagram diagram, Node node, QueryOptions options)
NodeInfo[]	QueryEngineSupport.addLinked(Diagram diagram, Node start, NodeInfo[] linked)           Appends linked nodes to the diagram.
Compartment	QueryEngineSupport.getCompartment(Node start, Base kernel)           Should return the most suitable compartment where new node should be located.
NodeInfo[]	QueryEngineSupport.searchLinked(Diagram diagram, Node node, QueryOptions options)
Dimension	SemanticController.move(Node node, Compartment parent, Dimension offset)           Moves the specified node to the specified position.

 

Uses of Node in biouml.model.dynamics

 

Methods in biouml.model.dynamics with parameters of type Node
CompositeView	EModelDiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)           Adds vriable value to node view.

 

Uses of Node in biouml.model.util

 

Methods in biouml.model.util with parameters of type Node
static void	DiagramXmlReader.readNodeInfo(Element element, Node node, String diagramName)
static void	DiagramXmlWriter.writeNodeInfo(Element element, Node node, Document doc)

 

Uses of Node in biouml.plugins.gxl

 

Methods in biouml.plugins.gxl that return Node
Node	GxlParserContext.getNodeContext()

 

Methods in biouml.plugins.gxl with parameters of type Node
void	GxlParserContext.enterNodeContext(Node node)

 

Uses of Node in biouml.plugins.sbml

 

Methods in biouml.plugins.sbml that return Node
Node	CreateDiagramElementDialog.getNode()

 

Methods in biouml.plugins.sbml with parameters of type Node
String	SbmlSupport.parseFormula(String formula, Node reaction)           General template to cinvert SBML formula into BioUML formula.

 

Uses of Node in biouml.standard.diagram

 

Methods in biouml.standard.diagram that return Node
Node	CreateDiagramElementDialog.getNode()

 

Methods in biouml.standard.diagram with parameters of type Node
CompositeView	PathwayDiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)
void	PathwayDiagramViewBuilder.locateReaction(Node reactionNode, DiagramViewOptions options, Graphics g)           Locate reaction.
CompositeView	PathwaySimulationDiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)