Uses of Diagram in biouml.model

 

Methods in biouml.model that return Diagram
static Diagram	Diagram.createDiagram(DiagramType type, String diagramName, DataCollection origin)
Diagram	Module.getDiagram(String name)

 

Methods in biouml.model with parameters of type Diagram
CompositeView	DefaultDiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)           Creates the diagram view
boolean	DiagramExporter.accept(Diagram diagram)           Returns true if the specified diagram can be exported in this format and false otherwise.
void	DiagramExporter.doExport(Diagram diagram, File file)           Exports the specified diagram into the specified file or directory.
DiagramFilter	DiagramType.getDiagramFilter(Diagram diagram)
void	DiagramTypeConverter.ConditionalConverter.convert(Diagram diagram, Class type)
void	DiagramTypeConverter.convert(Diagram diagram, Class type)
void	DiagramTypeConverter.NoConverter.convert(Diagram diagram, Class type)
void	DiagramTypeConverter.YesConverter.convert(Diagram diagram, Class type)
DiagramFilter	DiagramTypeSupport.getDiagramFilter(Diagram diagram)
CompositeView	DiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)
void	Module.putDiagram(Diagram diagram)
void	Node.setRelativeLocation(Diagram diagram, Point location)
NodeInfo[]	QueryEngine.addLinked(Diagram diagram, Node start, NodeInfo[] nodeInfoArr)
NodeInfo[]	QueryEngine.searchLinked(Diagram diagram, Node node, QueryOptions options)
NodeInfo[]	QueryEngineSupport.addLinked(Diagram diagram, Node start, NodeInfo[] linked)           Appends linked nodes to the diagram.
abstract NodeInfo[]	QueryEngineSupport.getLinked(Diagram diagram, NodeInfo node, QueryOptions opt)
NodeInfo[]	QueryEngineSupport.searchLinked(Diagram diagram, Node node, QueryOptions options)

 

Uses of Diagram in biouml.model.dynamics

 

Constructors in biouml.model.dynamics with parameters of type Diagram

VariablesDataCollection.VariablesDataCollection(DataCollection parent, Diagram diagram)

 

Uses of Diagram in biouml.model.htmlgen

 

Constructors in biouml.model.htmlgen with parameters of type Diagram

GenerateHTMLDialog.GenerateHTMLDialog(JDialog dialog, String title, Module module, Diagram diagram)

GenerateHTMLDialog.GenerateHTMLDialog(JFrame frame, String title, Module module, Diagram diagram)

 

Methods in biouml.model.htmlgen with parameters of type Diagram
static void	GenerateHTMLDialog.genHTML(Diagram diagram, File outputFolder, File templateFile, Category cat)

 

Uses of Diagram in biouml.model.util

 

Methods in biouml.model.util that return Diagram
Diagram	DiagramXmlReader.read()
Diagram	DiagramXmlReader.read(DataCollection origin, Module module)

 

Methods in biouml.model.util with parameters of type Diagram
void	DiagramXmlWriter.write(Diagram sourceDiagram, Module module, Transformer transformer)
void	DiagramXmlWriter.write(Diagram sourceDiagram, Module module)
static BufferedImage	ImageGenerator.generateDiagramImage(Diagram diagram, Graphics graphics)
static BufferedImage	ImageGenerator.generateDiagramImage(Diagram diagram)

 

Uses of Diagram in biouml.plugins.cellml

 

Methods in biouml.plugins.cellml that return Diagram
Diagram	CellMLModelReader.read(DataCollection origin, Module module)

 

Methods in biouml.plugins.cellml with parameters of type Diagram
void	CellMLModelWriter.write(Diagram sourceDiagram, Transformer transformer)
void	CellMLModelWriter.write(Diagram sourceDiagram)

 

Uses of Diagram in biouml.plugins.ginsim

 

Methods in biouml.plugins.ginsim with parameters of type Diagram
boolean	GinMLExporter.accept(Diagram diagram)
void	GinMLExporter.doExport(Diagram diagram, File file)

 

Uses of Diagram in biouml.plugins.gxl

 

Methods in biouml.plugins.gxl that return Diagram
Diagram	GxlReader.readDiagram(File file, DataCollection origin)

 

Methods in biouml.plugins.gxl with parameters of type Diagram
boolean	GxlExporter.accept(Diagram diagram)
void	GxlExporter.doExport(Diagram diagram, File file)
void	GxlWriter.writeDiagram(File file, Diagram diagram)

 

Uses of Diagram in biouml.plugins.jgraph

 

Methods in biouml.plugins.jgraph with parameters of type Diagram
static void	DiagramToJGraphTransformer.layout(Diagram diagram, Layouter layouter, Graphics g)

 

Uses of Diagram in biouml.plugins.sbml

 

Constructors in biouml.plugins.sbml with parameters of type Diagram

CreateDiagramElementDialog.CreateDiagramElementDialog(Diagram diagram, Compartment parent, Class type)

 

Methods in biouml.plugins.sbml that return Diagram
static Diagram	SbmlModelFactory.readDiagram(File file, DataCollection origin, String diagramName)
Diagram	SbmlModelReader.read(Document document, String name, DataCollection origin)

 

Methods in biouml.plugins.sbml with parameters of type Diagram
boolean	SbmlExporter.accept(Diagram diagram)
void	SbmlExporter.doExport(Diagram diagram, File file)
static Document	SbmlModelFactory.createDOM(Diagram diagram)
static void	SbmlModelFactory.writeDiagram(File file, Diagram sourceDiagram)
static boolean	SbmlModelWriter_21.isValidModel(Diagram diagram)           Checks if the model represented by diagram is representable in SBML level 1 version 1 model.
static boolean	SbmlModelWriter_L1.isValidModel(Diagram diagram)           Checks if the model represented by diagram is representable in SBML level 1 version 1 model.
Document	SbmlModelWriter.createDOM(Diagram sourceDiagram)
String	SbmlSemanticController.generateReactionName(Diagram diagram)           Generates unique reaction name for the specified diagram.
static Object	SbmlSemanticController.resolveName(Diagram diagram, String sname)           Search SBML model element with the specified name.

 

Uses of Diagram in biouml.plugins.simulation

 

Methods in biouml.plugins.simulation that return Diagram
Diagram	SimulationEngine.getDiagram()

 

Methods in biouml.plugins.simulation with parameters of type Diagram
void	SimulationEngine.setDiagram(Diagram diagram)

 

Uses of Diagram in biouml.plugins.svg

 

Methods in biouml.plugins.svg with parameters of type Diagram
boolean	SvgDiagramExporter.accept(Diagram diagram)           Accepts any diagram.
void	SvgDiagramExporter.doExport(Diagram diagram, File file)

 

Uses of Diagram in biouml.standard

 

Methods in biouml.standard with parameters of type Diagram
NodeInfo[]	StandardQueryEngine.getLinked(Diagram diagram, NodeInfo node, QueryOptions opt)

 

Uses of Diagram in biouml.standard.diagram

 

Constructors in biouml.standard.diagram with parameters of type Diagram

ReactionPane.ReactionPane(Diagram diagram, Compartment compartment, Point point, ViewEditorPane viewEditor)

 

Methods in biouml.standard.diagram with parameters of type Diagram
DiagramFilter	PathwayDiagramType.getDiagramFilter(Diagram diagram)
CompositeView	PathwayDiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)
String	PathwaySemanticController.generateReactionName(Diagram diagram)           Generates unique reaction name.
DiagramFilter	SemanticNetworkDiagramType.getDiagramFilter(Diagram diagram)

 

Uses of Diagram in biouml.standard.filter

 

Constructors in biouml.standard.filter with parameters of type Diagram

BiopolimerDiagramFilter.BiopolimerDiagramFilter(Diagram diagram)

 

Uses of Diagram in biouml.workbench.diagram

 

Constructors in biouml.workbench.diagram with parameters of type Diagram

ConvertDiagramDialog.ConvertDiagramDialog(Diagram diagram)

DiagramDocument.DiagramDocument(Diagram diagram)

DiagramEditorHelper.DiagramEditorHelper(Diagram diagram)

ExportDiagramDialog.ExportDiagramDialog(Diagram diagram)

 

Methods in biouml.workbench.diagram that return Diagram
Diagram	DiagramDocument.getDiagram()

 

Methods in biouml.workbench.diagram with parameters of type Diagram
static ExporterInfo[]	DiagramExporterRegistry.getExporterInfo(String format, Diagram diagram)           Returns suitable exporter for the specified format.
boolean	DiagramImageWriter.accept(Diagram diagram)           Accepts any diagram.
void	DiagramImageWriter.doExport(Diagram diagram, File file)
void	DiagramsPane.removeDiagram(Diagram diagram)