Uses of Compartment in biouml.model

 

Subclasses of Compartment in biouml.model
class	Diagram
class	EquivalentNodeGroup           Group of equivalent nodes.

 

Methods in biouml.model that return Compartment
Compartment	QueryEngineSupport.getCompartment(Node start, Base kernel)           Should return the most suitable compartment where new node should be located.

 

Methods in biouml.model with parameters of type Compartment
void	AbstractFilter.apply(Compartment diagram)           Hides or highlights diagram elements according to filter settings.
void	AbstractFilter.restoreView(Compartment diagram)           Restores original diagram view.
DiagramElement	Compartment.clone(Compartment newParent, String newName)
CompositeView	DefaultDiagramViewBuilder.createCompartmentView(Compartment compartment, DiagramViewOptions options, Graphics g)
boolean	DefaultSemanticController.canAccept(Compartment compartment, DiagramElement de)
boolean	DefaultSemanticController.canAccept(Compartment compartment, Class c)
DiagramElement	DefaultSemanticController.createInstance(Compartment compartment, Class type, Point point, ViewEditorPane viewEditor)
Dimension	DefaultSemanticController.move(Node node, Compartment newParent, Dimension offset)           Moves the specified diagram node to the specified position.
DiagramElement	DiagramElement.clone(Compartment newParent, String newName)
void	DiagramFilter.apply(Compartment diagram)           Hides or highlights diagram elements according to filter settings.
void	DiagramFilter.restoreView(Compartment diagram)           Restores original diagram view.
void	DiagramTypeConverter.ConditionalConverter.checkElements(List list, Compartment compartment, DiagramType type)
CompositeView	DiagramViewBuilder.createCompartmentView(Compartment compartment, DiagramViewOptions options, Graphics g)
DiagramElement	Edge.clone(Compartment newParent, String newName)
DiagramElement	Node.clone(Compartment newParent, String newName)
boolean	SemanticController.canAccept(Compartment compartment, DiagramElement de)
boolean	SemanticController.canAccept(Compartment compartment, Class c)
DiagramElement	SemanticController.createInstance(Compartment compartment, Class type, Point point, ViewEditorPane viewEditor)
Dimension	SemanticController.move(Node node, Compartment parent, Dimension offset)           Moves the specified node to the specified position.

 

Uses of Compartment in biouml.model.dynamics

 

Methods in biouml.model.dynamics with parameters of type Compartment
void	EModel.fillList(Compartment compartment, List list, Class role)

 

Uses of Compartment in biouml.model.util

 

Methods in biouml.model.util with parameters of type Compartment
static void	DiagramXmlReader.readCompartmentInfo(Element element, Compartment compartment, String diagramName)
static void	DiagramXmlWriter.writeCompartmentInfo(Element element, Compartment compartment)

 

Uses of Compartment in biouml.plugins.jgraph

 

Methods in biouml.plugins.jgraph with parameters of type Compartment
static void	DiagramToJGraphTransformer.applyLayout(Compartment diagram, GraphModel graph)
static GraphModel	DiagramToJGraphTransformer.generateGraph(Compartment diagram, Filter filter)           Generates graph for BioUML diagram or its part.

 

Uses of Compartment in biouml.plugins.sbml

 

Constructors in biouml.plugins.sbml with parameters of type Compartment

CreateDiagramElementDialog.CreateDiagramElementDialog(Diagram diagram, Compartment parent, Class type)

 

Methods in biouml.plugins.sbml with parameters of type Compartment
void	SbmlModelReader.layout(Compartment compartment, int x, int y)           Hierarchically layout compartments and species.
void	SbmlModelReader.layout(Compartment compartment)           Stub implimentation for diagram layout.
DiagramElement	SbmlSemanticController.createInstance(Compartment parent, Class type, Point point, ViewEditorPane viewEditor)           Creates diagram element for the specified kernel type, parent compartment and location.

 

Uses of Compartment in biouml.standard.diagram

 

Constructors in biouml.standard.diagram with parameters of type Compartment

CreateDiagramElementDialog.CreateDiagramElementDialog(Compartment parent, Class type)

CreateEdgeDialog.CreateEdgeDialog(Compartment parent, Point point, ViewEditorPane viewEditor, String title, SemanticRelationPane relationPane)

NoteLinkPane.NoteLinkPane(Compartment parent, ViewEditorPane viewEditor)

ReactionPane.ReactionPane(Diagram diagram, Compartment compartment, Point point, ViewEditorPane viewEditor)

SemanticRelationPane.SemanticRelationPane(Compartment parent, ViewEditorPane viewEditor)

 

Methods in biouml.standard.diagram with parameters of type Compartment
static CreateEdgeDialog	CreateEdgeDialog.getNoteLinkDialog(Compartment parent, Point point, ViewEditorPane viewEditor)
static CreateEdgeDialog	CreateEdgeDialog.getSemanticRelationDialog(Compartment parent, Point point, ViewEditorPane viewEditor)
void	PathwayDiagramViewBuilder.createReactionTitles(Compartment compartment, DiagramViewOptions diagramOptions, Graphics g)
DiagramElement	PathwaySemanticController.createInstance(Compartment parent, Class type, Point point, ViewEditorPane viewEditor)
DiagramElement	PathwaySimulationSemanticController.createInstance(Compartment parent, Class type, Point pt, ViewEditorPane viewEditor)