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## Uses of Class
biouml.model.Diagram

Packages that use Diagram
biouml.model |
biouml.model.dynamics |
biouml.model.htmlgen |
biouml.model.util |
biouml.plugins.cellml |
biouml.plugins.ginsim |
biouml.plugins.gxl |
biouml.plugins.jgraph |
biouml.plugins.sbml |
biouml.plugins.simulation |
biouml.plugins.svg |
biouml.standard |
biouml.standard.diagram |
biouml.standard.filter |
biouml.workbench.diagram |

Uses of Diagram in biouml.model

Methods in biouml.model that return Diagram
`static Diagram` | `Diagram.createDiagram(DiagramType type, String diagramName, DataCollection origin)`
`Diagram` | `Module.getDiagram(String name)`

Methods in biouml.model with parameters of type Diagram
`CompositeView` | `DefaultDiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)` Creates the diagram view
`boolean` | `DiagramExporter.accept(Diagram diagram)` Returns true if the specified diagram can be exported in this format and false otherwise.
`void` | `DiagramExporter.doExport(Diagram diagram, File file)` Exports the specified diagram into the specified file or directory.
`DiagramFilter` | `DiagramType.getDiagramFilter(Diagram diagram)`
`void` | `DiagramTypeConverter.ConditionalConverter.convert(Diagram diagram, Class type)`
`void` | `DiagramTypeConverter.convert(Diagram diagram, Class type)`
`void` | `DiagramTypeConverter.NoConverter.convert(Diagram diagram, Class type)`
`void` | `DiagramTypeConverter.YesConverter.convert(Diagram diagram, Class type)`
`DiagramFilter` | `DiagramTypeSupport.getDiagramFilter(Diagram diagram)`
`CompositeView` | `DiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)`
`void` | `Module.putDiagram(Diagram diagram)`
`void` | `Node.setRelativeLocation(Diagram diagram, Point location)`
`NodeInfo[]` | `QueryEngine.addLinked(Diagram diagram, Node start, NodeInfo[] nodeInfoArr)`
`NodeInfo[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, QueryOptions options)`
`NodeInfo[]` | `QueryEngineSupport.addLinked(Diagram diagram, Node start, NodeInfo[] linked)` Appends linked nodes to the diagram.
`abstract NodeInfo[]` | `QueryEngineSupport.getLinked(Diagram diagram, NodeInfo node, QueryOptions opt)`
`NodeInfo[]` | `QueryEngineSupport.searchLinked(Diagram diagram, Node node, QueryOptions options)`

Uses of Diagram in biouml.model.dynamics

Constructors in biouml.model.dynamics with parameters of type Diagram
`VariablesDataCollection.VariablesDataCollection(DataCollection parent, Diagram diagram)`

Uses of Diagram in biouml.model.htmlgen

Constructors in biouml.model.htmlgen with parameters of type Diagram
`GenerateHTMLDialog.GenerateHTMLDialog(JDialog dialog, String title, Module module, Diagram diagram)`
`GenerateHTMLDialog.GenerateHTMLDialog(JFrame frame, String title, Module module, Diagram diagram)`

Methods in biouml.model.htmlgen with parameters of type Diagram
`static void` | `GenerateHTMLDialog.genHTML(Diagram diagram, File outputFolder, File templateFile, Category cat)`

Uses of Diagram in biouml.model.util

Methods in biouml.model.util that return Diagram
`Diagram` | `DiagramXmlReader.read()`
`Diagram` | `DiagramXmlReader.read(DataCollection origin, Module module)`

Methods in biouml.model.util with parameters of type Diagram
`void` | `DiagramXmlWriter.write(Diagram sourceDiagram, Module module, Transformer transformer)`
`void` | `DiagramXmlWriter.write(Diagram sourceDiagram, Module module)`
`static BufferedImage` | `ImageGenerator.generateDiagramImage(Diagram diagram, Graphics graphics)`
`static BufferedImage` | `ImageGenerator.generateDiagramImage(Diagram diagram)`

Uses of Diagram in biouml.plugins.cellml

Methods in biouml.plugins.cellml that return Diagram
`Diagram` | `CellMLModelReader.read(DataCollection origin, Module module)`

Methods in biouml.plugins.cellml with parameters of type Diagram
`void` | `CellMLModelWriter.write(Diagram sourceDiagram, Transformer transformer)`
`void` | `CellMLModelWriter.write(Diagram sourceDiagram)`

Uses of Diagram in biouml.plugins.ginsim

Methods in biouml.plugins.ginsim with parameters of type Diagram
`boolean` | `GinMLExporter.accept(Diagram diagram)`
`void` | `GinMLExporter.doExport(Diagram diagram, File file)`

Uses of Diagram in biouml.plugins.gxl

Methods in biouml.plugins.gxl that return Diagram
`Diagram` | `GxlReader.readDiagram(File file, DataCollection origin)`

Methods in biouml.plugins.gxl with parameters of type Diagram
`boolean` | `GxlExporter.accept(Diagram diagram)`
`void` | `GxlExporter.doExport(Diagram diagram, File file)`
`void` | `GxlWriter.writeDiagram(File file, Diagram diagram)`

Uses of Diagram in biouml.plugins.jgraph

Methods in biouml.plugins.jgraph with parameters of type Diagram
`static void` | `DiagramToJGraphTransformer.layout(Diagram diagram, Layouter layouter, Graphics g)`

Uses of Diagram in biouml.plugins.sbml

Constructors in biouml.plugins.sbml with parameters of type Diagram
`CreateDiagramElementDialog.CreateDiagramElementDialog(Diagram diagram, Compartment parent, Class type)`

Methods in biouml.plugins.sbml that return Diagram
`static Diagram` | `SbmlModelFactory.readDiagram(File file, DataCollection origin, String diagramName)`
`Diagram` | `SbmlModelReader.read(Document document, String name, DataCollection origin)`

Methods in biouml.plugins.sbml with parameters of type Diagram
`boolean` | `SbmlExporter.accept(Diagram diagram)`
`void` | `SbmlExporter.doExport(Diagram diagram, File file)`
`static Document` | `SbmlModelFactory.createDOM(Diagram diagram)`
`static void` | `SbmlModelFactory.writeDiagram(File file, Diagram sourceDiagram)`
`static boolean` | `SbmlModelWriter_21.isValidModel(Diagram diagram)` Checks if the model represented by diagram is representable in SBML level 1 version 1 model.
`static boolean` | `SbmlModelWriter_L1.isValidModel(Diagram diagram)` Checks if the model represented by diagram is representable in SBML level 1 version 1 model.
`Document` | `SbmlModelWriter.createDOM(Diagram sourceDiagram)`
`String` | `SbmlSemanticController.generateReactionName(Diagram diagram)` Generates unique reaction name for the specified diagram.
`static Object` | `SbmlSemanticController.resolveName(Diagram diagram, String sname)` Search SBML model element with the specified name.

Uses of Diagram in biouml.plugins.simulation

Methods in biouml.plugins.simulation that return Diagram
`Diagram` | `SimulationEngine.getDiagram()`

Methods in biouml.plugins.simulation with parameters of type Diagram
`void` | `SimulationEngine.setDiagram(Diagram diagram)`

Uses of Diagram in biouml.plugins.svg

Methods in biouml.plugins.svg with parameters of type Diagram
`boolean` | `SvgDiagramExporter.accept(Diagram diagram)` Accepts any diagram.
`void` | `SvgDiagramExporter.doExport(Diagram diagram, File file)`

Uses of Diagram in biouml.standard

Methods in biouml.standard with parameters of type Diagram
`NodeInfo[]` | `StandardQueryEngine.getLinked(Diagram diagram, NodeInfo node, QueryOptions opt)`

Uses of Diagram in biouml.standard.diagram

Constructors in biouml.standard.diagram with parameters of type Diagram
`ReactionPane.ReactionPane(Diagram diagram, Compartment compartment, Point point, ViewEditorPane viewEditor)`

Methods in biouml.standard.diagram with parameters of type Diagram
`DiagramFilter` | `PathwayDiagramType.getDiagramFilter(Diagram diagram)`
`CompositeView` | `PathwayDiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)`
`String` | `PathwaySemanticController.generateReactionName(Diagram diagram)` Generates unique reaction name.
`DiagramFilter` | `SemanticNetworkDiagramType.getDiagramFilter(Diagram diagram)`

Uses of Diagram in biouml.standard.filter

Constructors in biouml.standard.filter with parameters of type Diagram
`BiopolimerDiagramFilter.BiopolimerDiagramFilter(Diagram diagram)`

Uses of Diagram in biouml.workbench.diagram

Constructors in biouml.workbench.diagram with parameters of type Diagram
`ConvertDiagramDialog.ConvertDiagramDialog(Diagram diagram)`
`DiagramDocument.DiagramDocument(Diagram diagram)`
`DiagramEditorHelper.DiagramEditorHelper(Diagram diagram)`
`ExportDiagramDialog.ExportDiagramDialog(Diagram diagram)`

Methods in biouml.workbench.diagram that return Diagram
`Diagram` | `DiagramDocument.getDiagram()`

Methods in biouml.workbench.diagram with parameters of type Diagram
`static ExporterInfo[]` | `DiagramExporterRegistry.getExporterInfo(String format, Diagram diagram)` Returns suitable exporter for the specified format.
`boolean` | `DiagramImageWriter.accept(Diagram diagram)` Accepts any diagram.
`void` | `DiagramImageWriter.doExport(Diagram diagram, File file)`
`void` | `DiagramsPane.removeDiagram(Diagram diagram)`

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