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## Uses of Class
biouml.model.Compartment

Packages that use Compartment
biouml.model |
biouml.model.dynamics |
biouml.model.util |
biouml.plugins.jgraph |
biouml.plugins.sbml |
biouml.standard.diagram |

Uses of Compartment in biouml.model

Subclasses of Compartment in biouml.model
`class` | `Diagram`
`class` | `EquivalentNodeGroup` Group of equivalent nodes.

Methods in biouml.model that return Compartment
`Compartment` | `QueryEngineSupport.getCompartment(Node start, Base kernel)` Should return the most suitable compartment where new node should be located.

Methods in biouml.model with parameters of type Compartment
`void` | `AbstractFilter.apply(Compartment diagram)` Hides or highlights diagram elements according to filter settings.
`void` | `AbstractFilter.restoreView(Compartment diagram)` Restores original diagram view.
`DiagramElement` | `Compartment.clone(Compartment newParent, String newName)`
`CompositeView` | `DefaultDiagramViewBuilder.createCompartmentView(Compartment compartment, DiagramViewOptions options, Graphics g)`
`boolean` | `DefaultSemanticController.canAccept(Compartment compartment, DiagramElement de)`
`boolean` | `DefaultSemanticController.canAccept(Compartment compartment, Class c)`
`DiagramElement` | `DefaultSemanticController.createInstance(Compartment compartment, Class type, Point point, ViewEditorPane viewEditor)`
`Dimension` | `DefaultSemanticController.move(Node node, Compartment newParent, Dimension offset)` Moves the specified diagram node to the specified position.
`DiagramElement` | `DiagramElement.clone(Compartment newParent, String newName)`
`void` | `DiagramFilter.apply(Compartment diagram)` Hides or highlights diagram elements according to filter settings.
`void` | `DiagramFilter.restoreView(Compartment diagram)` Restores original diagram view.
`void` | `DiagramTypeConverter.ConditionalConverter.checkElements(List list, Compartment compartment, DiagramType type)`
`CompositeView` | `DiagramViewBuilder.createCompartmentView(Compartment compartment, DiagramViewOptions options, Graphics g)`
`DiagramElement` | `Edge.clone(Compartment newParent, String newName)`
`DiagramElement` | `Node.clone(Compartment newParent, String newName)`
`boolean` | `SemanticController.canAccept(Compartment compartment, DiagramElement de)`
`boolean` | `SemanticController.canAccept(Compartment compartment, Class c)`
`DiagramElement` | `SemanticController.createInstance(Compartment compartment, Class type, Point point, ViewEditorPane viewEditor)`
`Dimension` | `SemanticController.move(Node node, Compartment parent, Dimension offset)` Moves the specified node to the specified position.

Uses of Compartment in biouml.model.dynamics

Methods in biouml.model.dynamics with parameters of type Compartment
`void` | `EModel.fillList(Compartment compartment, List list, Class role)`

Uses of Compartment in biouml.model.util

Methods in biouml.model.util with parameters of type Compartment
`static void` | `DiagramXmlReader.readCompartmentInfo(Element element, Compartment compartment, String diagramName)`
`static void` | `DiagramXmlWriter.writeCompartmentInfo(Element element, Compartment compartment)`

Uses of Compartment in biouml.plugins.jgraph

Methods in biouml.plugins.jgraph with parameters of type Compartment
`static void` | `DiagramToJGraphTransformer.applyLayout(Compartment diagram, GraphModel graph)`
`static GraphModel` | `DiagramToJGraphTransformer.generateGraph(Compartment diagram, Filter filter)` Generates graph for BioUML diagram or its part.

Uses of Compartment in biouml.plugins.sbml

Constructors in biouml.plugins.sbml with parameters of type Compartment
`CreateDiagramElementDialog.CreateDiagramElementDialog(Diagram diagram, Compartment parent, Class type)`

Methods in biouml.plugins.sbml with parameters of type Compartment
`void` | `SbmlModelReader.layout(Compartment compartment, int x, int y)` Hierarchically layout compartments and species.
`void` | `SbmlModelReader.layout(Compartment compartment)` Stub implimentation for diagram layout.
`DiagramElement` | `SbmlSemanticController.createInstance(Compartment parent, Class type, Point point, ViewEditorPane viewEditor)` Creates diagram element for the specified kernel type, parent compartment and location.

Uses of Compartment in biouml.standard.diagram

Constructors in biouml.standard.diagram with parameters of type Compartment
`CreateDiagramElementDialog.CreateDiagramElementDialog(Compartment parent, Class type)`
`CreateEdgeDialog.CreateEdgeDialog(Compartment parent, Point point, ViewEditorPane viewEditor, String title, SemanticRelationPane relationPane)`
`NoteLinkPane.NoteLinkPane(Compartment parent, ViewEditorPane viewEditor)`
`ReactionPane.ReactionPane(Diagram diagram, Compartment compartment, Point point, ViewEditorPane viewEditor)`
`SemanticRelationPane.SemanticRelationPane(Compartment parent, ViewEditorPane viewEditor)`

Methods in biouml.standard.diagram with parameters of type Compartment
`static CreateEdgeDialog` | `CreateEdgeDialog.getNoteLinkDialog(Compartment parent, Point point, ViewEditorPane viewEditor)`
`static CreateEdgeDialog` | `CreateEdgeDialog.getSemanticRelationDialog(Compartment parent, Point point, ViewEditorPane viewEditor)`
`void` | `PathwayDiagramViewBuilder.createReactionTitles(Compartment compartment, DiagramViewOptions diagramOptions, Graphics g)`
`DiagramElement` | `PathwaySemanticController.createInstance(Compartment parent, Class type, Point point, ViewEditorPane viewEditor)`
`DiagramElement` | `PathwaySimulationSemanticController.createInstance(Compartment parent, Class type, Point pt, ViewEditorPane viewEditor)`

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