Serialized Form

Package biouml.model.htmlgen

Class biouml.model.htmlgen.GenerateHTMLAction extends javax.swing.AbstractAction implements Serializable

Class biouml.model.htmlgen.GenerateHTMLDialog extends OkCancelDialog implements Serializable

Serialized Fields

content

javax.swing.JPanel content

module

Module module

diagram

Diagram diagram

modulesComboBox

javax.swing.JComboBox modulesComboBox

diagramsComboBox

javax.swing.JComboBox diagramsComboBox

diagramsLabal

javax.swing.JLabel diagramsLabal

outputFolderTextField

javax.swing.JTextField outputFolderTextField

templateTextField

javax.swing.JTextField templateTextField

scopeComboBox

javax.swing.JComboBox scopeComboBox

Package biouml.plugins.matlab

Class biouml.plugins.matlab.MatlabEngineControl extends SimulationEnginePane implements Serializable

Serialized Fields

closeAction

javax.swing.Action closeAction

Class biouml.plugins.matlab.MatlabErrorDialog extends OkCancelDialog implements Serializable

Serialized Fields

propertyInspector

com.beanexplorer.swing.PropertyInspector propertyInspector

diagramElement

DiagramElement diagramElement

Class biouml.plugins.matlab.MatlabErrorPane extends javax.swing.JPanel implements Serializable

Serialized Fields

info

javax.swing.JTextArea info

Package biouml.plugins.sbml

Class biouml.plugins.sbml.CreateDiagramElementDialog extends OkCancelDialog implements Serializable

Serialized Fields

diagram

Diagram diagram

parent

Compartment parent

type

java.lang.Class type

resources

MessageBundle resources

nameField

javax.swing.JTextField nameField

specieType

javax.swing.JComboBox specieType

node

Node node

Package biouml.plugins.sbml._test

Class biouml.plugins.sbml._test.AutoTest extends TestCase implements Serializable

Class biouml.plugins.sbml._test.SbmlJavaTest extends TestCase implements Serializable

Class biouml.plugins.sbml._test.SbmlMatlabTest extends TestCase implements Serializable

Class biouml.plugins.sbml._test.SbmlReaderTest extends TestCase implements Serializable

Class biouml.plugins.sbml._test.SbmlSemanticTest extends TestCase implements Serializable

Class biouml.plugins.sbml._test.SbmlWriterTest extends TestCase implements Serializable

Package biouml.plugins.simulation

Class biouml.plugins.simulation.RepositoryActionsProvider.ShowPlotAction extends javax.swing.AbstractAction implements Serializable

Class biouml.plugins.simulation.SimulationEnginePane extends EditorPartSupport implements Serializable

Serialized Fields

log

org.apache.log4j.Category log

inspector

com.beanexplorer.swing.PropertyInspector inspector

categoryList

java.lang.String[] categoryList

appender

TextPaneAppender appender

simulationEngine

SimulationEngine simulationEngine

executableModel

EModel executableModel

view

javax.swing.JComponent view

model

java.lang.Object model

actions

javax.swing.Action[] actions

generateCodeAction

javax.swing.Action generateCodeAction

simulateAction

javax.swing.Action simulateAction

saveResultAction

javax.swing.Action saveResultAction

plotAction

javax.swing.Action plotAction

simulationResult

SimulationResult simulationResult

Class biouml.plugins.simulation.SimulationPane extends javax.swing.JPanel implements Serializable

Serialized Fields

simulationControl

SimulationControl simulationControl

inspector

com.beanexplorer.swing.PropertyInspector inspector

appender

TextPaneAppender appender

jobControlPane

JobControlPane jobControlPane

dataset

org.jfree.data.XYSeriesCollection dataset

chart

org.jfree.chart.JFreeChart chart

startButton

javax.swing.JButton startButton

stopButton

javax.swing.JButton stopButton

progress

javax.swing.JProgressBar progress

legends

java.util.HashMap legends

Package biouml.plugins.simulation.java

Class biouml.plugins.simulation.java.JavaEngineControl extends SimulationEnginePane implements Serializable

Package biouml.plugins.simulation.plot

Class biouml.plugins.simulation.plot.PlotDialog extends OkCancelDialog implements Serializable

Serialized Fields

messageBundle

MessageBundle messageBundle

jTabPanel

javax.swing.JTabbedPane jTabPanel

editor

PlotEditorPane editor

chart

PlotPane chart

Class biouml.plugins.simulation.plot.PlotEditorPane extends javax.swing.JPanel implements Serializable

Serialized Fields

messageBundle

MessageBundle messageBundle

plotEx

PlotEx plotEx

plotInspector

com.beanexplorer.swing.PropertyInspector plotInspector

tabSeriesInspector

com.beanexplorer.swing.TabularPropertyInspector tabSeriesInspector

resultName

javax.swing.JComboBox resultName

xVariable

javax.swing.JComboBox xVariable

yVariable

javax.swing.JComboBox yVariable

plotType

javax.swing.JComboBox plotType

addButton

javax.swing.JButton addButton

removeButton

javax.swing.JButton removeButton

Class biouml.plugins.simulation.plot.PlotPane extends javax.swing.JPanel implements Serializable

Serialized Fields

chart

org.jfree.chart.JFreeChart chart

plot

Plot plot

resultCollection

DataCollection resultCollection

seriesChanged

boolean seriesChanged

Package biouml.standard.diagram

Class biouml.standard.diagram.CreateDiagramElementDialog extends OkCancelDialog implements Serializable

Serialized Fields

resources

MessageBundle resources

parent

Compartment parent

node

Node node

type

java.lang.Class type

cbName

javax.swing.JComboBox cbName

cbTitle

javax.swing.JComboBox cbTitle

cbTitleModel

javax.swing.ComboBoxModel cbTitleModel

explorerPane

ExplorerPane explorerPane

kernelDC

DataCollection kernelDC

selectedKernel

Base selectedKernel

Class biouml.standard.diagram.CreateEdgeDialog extends OkCancelDialog implements Serializable

Serialized Fields

content

SemanticRelationPane content

Class biouml.standard.diagram.CreateReactionDialog extends OkCancelDialog implements Serializable

Serialized Fields

reactionPane

ReactionPane reactionPane

Class biouml.standard.diagram.DiagramElementSelector extends javax.swing.JPanel implements Serializable

Serialized Fields

button

javax.swing.JRadioButton button

field

javax.swing.JTextField field

diagramElement

DiagramElement diagramElement

Class biouml.standard.diagram.NoteLinkPane extends SemanticRelationPane implements Serializable

Class biouml.standard.diagram.ReactionPane extends javax.swing.JPanel implements Serializable

Serialized Fields

diagram

Diagram diagram

compartment

Compartment compartment

point

java.awt.Point point

viewEditor

ViewEditorPane viewEditor

adapter

ViewPaneAdapter adapter

componentName

javax.swing.JTextField componentName

variableName

javax.swing.JTextField variableName

componentRole

javax.swing.JComboBox componentRole

components

com.beanexplorer.swing.table.DefaultRowModel components

componentsTable

com.beanexplorer.swing.TabularPropertyInspector componentsTable

reactionRate

javax.swing.JTextField reactionRate

resources

java.util.ResourceBundle resources

Class biouml.standard.diagram.SemanticRelationPane extends javax.swing.JPanel implements Serializable

Serialized Fields

inSelector

DiagramElementSelector inSelector

outSelector

DiagramElementSelector outSelector

relation

Base relation

parent

Compartment parent

viewEditor

ViewEditorPane viewEditor

adapter

ViewPaneAdapter adapter

okButton

javax.swing.JButton okButton

Package biouml.standard.filter

Class biouml.standard.filter.ActionEditor.ActionComboBox extends com.beanexplorer.editors.ColorComboBox implements Serializable

Class biouml.standard.filter.ActionEditor.ActionRenderer extends javax.swing.JLabel implements Serializable

Serialized Fields

action

Action action

Package biouml.standard.type.access

Class biouml.standard.type.access.TitleSqlIndex extends java.util.HashMap implements Serializable

Serialized Fields

sqlDC

SqlDataCollection sqlDC

titleList

java.util.List titleList

listenerList

javax.swing.event.EventListenerList listenerList

selectedItem

java.lang.Object selectedItem

index

int index

Package biouml.workbench

Class biouml.workbench.AskIDDialog extends OkCancelDialog implements Serializable

Serialized Fields

id

javax.swing.JTextField id

content

javax.swing.JPanel content

Class biouml.workbench.BioUMLApplication extends ApplicationFrame implements Serializable

Serialized Fields

diagramViewListener

BioUMLApplication.DiagramViewListener diagramViewListener

Class biouml.workbench.NewDataElementAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.PreferencesAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.PreferencesDialog extends javax.swing.JDialog implements Serializable

Class biouml.workbench.RemoveDataElementAction extends javax.swing.AbstractAction implements Serializable

Package biouml.workbench.diagram

Class biouml.workbench.diagram.ClipboardView extends ViewPartSupport implements Serializable

Serialized Fields

clipboardModel

com.beanexplorer.swing.table.DefaultRowModel clipboardModel

clipboardTable

com.beanexplorer.swing.TabularPropertyInspector clipboardTable

exploredDiagramElement

DiagramElement exploredDiagramElement

copyAction

javax.swing.Action copyAction

pasteAction

javax.swing.Action pasteAction

deleteAction

javax.swing.Action deleteAction

actions

javax.swing.Action[] actions

Class biouml.workbench.diagram.CloseDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.ConvertDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.ConvertDiagramDialog extends ProcessDiagramDialog implements Serializable

Serialized Fields

currentType

javax.swing.JLabel currentType

diagramType

javax.swing.JComboBox diagramType

conversions

DiagramTypeConverterRegistry.Conversion[] conversions

Class biouml.workbench.diagram.DiagramDescriptionEditor extends HtmlEditor implements Serializable

Class biouml.workbench.diagram.DiagramsPane extends javax.swing.JPanel implements Serializable

Serialized Fields

tabbedPane

javax.swing.JTabbedPane tabbedPane

tabs

java.util.HashMap tabs

Class biouml.workbench.diagram.ExportDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.ExportDiagramDialog extends ProcessDiagramDialog implements Serializable

Serialized Fields

tfPath

javax.swing.JTextField tfPath

diagram

Diagram diagram

currentType

javax.swing.JLabel currentType

formatComboBox

javax.swing.JComboBox formatComboBox

Class biouml.workbench.diagram.FilterView extends ViewPartSupport implements Serializable

Class biouml.workbench.diagram.ImportDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.ImportDiagramDialog extends ProcessDiagramDialog implements Serializable

Serialized Fields

tfDiagramName

javax.swing.JTextField tfDiagramName

tfPath

javax.swing.JTextField tfPath

diagram

Diagram diagram

currentType

javax.swing.JLabel currentType

formatComboBox

javax.swing.JComboBox formatComboBox

module

Module module

Class biouml.workbench.diagram.LegendView extends HtmlView implements Serializable

Class biouml.workbench.diagram.NewDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.NewDiagramDialog extends OkCancelDialog implements Serializable

Serialized Fields

repository

DataCollection repository

moduleType

javax.swing.JComboBox moduleType

diagramName

javax.swing.JTextField diagramName

diagramType

javax.swing.JComboBox diagramType

diagramTypeDescription

javax.swing.JEditorPane diagramTypeDescription

diagramTypes

java.lang.Class[] diagramTypes

diagramCompleteName

java.lang.String diagramCompleteName

Class biouml.workbench.diagram.OpenDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.ParametersTabularEditor extends TabularPropertiesEditor implements Serializable

Serialized Fields

template

java.lang.Object template

executableModel

EModel executableModel

Class biouml.workbench.diagram.ProcessDiagramDialog extends OkCancelDialog implements Serializable

Serialized Fields

log

org.apache.log4j.Category log

appender

TextPaneAppender appender

diagram

Diagram diagram

messageBundle

MessageBundle messageBundle

Class biouml.workbench.diagram.SaveAsDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.SaveDiagramAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.VariablesTabularEditor extends ParametersTabularEditor implements Serializable

Class biouml.workbench.diagram.ZoomInAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.diagram.ZoomOutAction extends javax.swing.AbstractAction implements Serializable

Package biouml.workbench.module

Class biouml.workbench.module.ExportModuleAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.module.ModuleExportDialog extends OkCancelDialog implements Serializable

Serialized Fields

content

javax.swing.JPanel content

selectedFile

java.io.File selectedFile

manifest

java.util.jar.Manifest manifest

module

Module module

nameTextField

javax.swing.JTextField nameTextField

versionTextField

javax.swing.JTextField versionTextField

descTextField

javax.swing.JTextField descTextField

pathTextField

javax.swing.JTextField pathTextField

Class biouml.workbench.module.ModuleInfoDialog extends OkCancelDialog implements Serializable

Serialized Fields

content

javax.swing.JPanel content

Class biouml.workbench.module.ModuleReplaceDialog extends OkCancelDialog implements Serializable

Serialized Fields

content

javax.swing.JPanel content

Class biouml.workbench.module.ModulesActivatingDialog extends OkCancelDialog implements Serializable

Serialized Fields

mapping

java.util.HashMap mapping

Class biouml.workbench.module.ModuleSetupAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.module.NewModuleAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.module.NewModuleDialog extends OkCancelDialog implements Serializable

Serialized Fields

extensionMap

java.util.HashMap extensionMap

Hashmap for extensions: key=displayName, value= configuration element

resources

MessageBundle resources

moduleName

javax.swing.JTextField moduleName

moduleType

javax.swing.JComboBox moduleType

moduleDescription

javax.swing.JEditorPane moduleDescription

content

javax.swing.JPanel content

Class biouml.workbench.module.RemoveModuleAction extends javax.swing.AbstractAction implements Serializable

Class biouml.workbench.module.StatusInfoDialog extends OkCancelDialog implements Serializable

Serialized Fields

appender

TextPaneAppender appender

infoLabel

javax.swing.JLabel infoLabel

progressBar

javax.swing.JProgressBar progressBar

Package com.developmentontheedge.application

Class com.developmentontheedge.application.ApplicationFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

documentManager

DocumentManager documentManager

panelManager

PanelManager panelManager

menuBar

ApplicationMenuBar menuBar

toolBar

ApplicationToolBar toolBar

statusBar

ApplicationStatusBar statusBar

Class com.developmentontheedge.application.ApplicationMenu extends javax.swing.JMenu implements Serializable

Class com.developmentontheedge.application.ApplicationMenuBar extends javax.swing.JMenuBar implements Serializable

Class com.developmentontheedge.application.ApplicationPopupMenu extends javax.swing.JPopupMenu implements Serializable

Class com.developmentontheedge.application.ApplicationStatusBar extends javax.swing.JPanel implements Serializable

Serialized Fields

label

javax.swing.JLabel label

preferredSize

java.awt.Dimension preferredSize

progressBar

javax.swing.JProgressBar progressBar

timer

java.util.Timer timer

target

int target

Class com.developmentontheedge.application.ApplicationToolBar extends javax.swing.JToolBar implements Serializable

Serialized Fields

buttons

java.util.HashMap buttons

mouseListener

java.awt.event.MouseListener mouseListener

border

javax.swing.border.BevelBorder border

Class com.developmentontheedge.application.MapRegistry extends java.util.Properties implements Serializable

Class com.developmentontheedge.application.NamedPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

label

javax.swing.JLabel label

Class com.developmentontheedge.application.PanelManager extends javax.swing.JPanel implements Serializable

Serialized Fields

infos

java.util.HashMap infos

defaultDividerSize

int defaultDividerSize

sizesDividerLocation

java.util.HashMap sizesDividerLocation

Package com.developmentontheedge.application.action

Class com.developmentontheedge.application.action.ApplicationAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

actionListeners

java.util.Vector actionListeners

Action listener

Class com.developmentontheedge.application.action.ApplicationAction.ActionAboutDialog extends ApplicationAction implements Serializable

Class com.developmentontheedge.application.action.ApplicationAction.ActionExit extends ApplicationAction implements Serializable

Class com.developmentontheedge.application.action.ApplicationAction.ActionHelp extends ApplicationAction implements Serializable

Class com.developmentontheedge.application.action.ApplicationAction.ActionPrint extends ApplicationAction implements Serializable

Class com.developmentontheedge.application.action.ApplicationAction.ActionPrintPreview extends ApplicationAction implements Serializable

Class com.developmentontheedge.application.action.ApplicationAction.ActionPrintSetup extends ApplicationAction implements Serializable

Class com.developmentontheedge.application.action.SeparatorAction extends javax.swing.AbstractAction implements Serializable

Class com.developmentontheedge.application.action.TogglePanelAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

key

java.lang.String key

panelManager

PanelManager panelManager

Package com.developmentontheedge.application.dialog

Class com.developmentontheedge.application.dialog.BrowseTextField extends TextButtonField implements Serializable

Serialized Fields

selectedFile

java.io.File selectedFile

listeners

java.util.Vector listeners

Class com.developmentontheedge.application.dialog.OkCancelDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

mainPanel

javax.swing.JPanel mainPanel

buttonPanel

javax.swing.JPanel buttonPanel

okButton

javax.swing.JButton okButton

"Ok" button

cancelButton

javax.swing.JButton cancelButton

"Cancel" button

result

boolean result

Result of dialog executing

Class com.developmentontheedge.application.dialog.TextButtonField extends javax.swing.JPanel implements Serializable

Serialized Fields

textField

javax.swing.JTextField textField

button

javax.swing.JButton button

Package com.developmentontheedge.jobcontrol

Class com.developmentontheedge.jobcontrol.JobControlException extends java.lang.Exception implements Serializable

Serialized Fields

status

int status

error

java.lang.Throwable error

Class com.developmentontheedge.jobcontrol.JobControlPane extends javax.swing.JPanel implements Serializable

Serialized Fields

borderLayout1

java.awt.BorderLayout borderLayout1

toolBar

com.developmentontheedge.jobcontrol.JobControlPane.MToolBar toolBar

centerPanel

javax.swing.JPanel centerPanel

flowLayout1

java.awt.FlowLayout flowLayout1

progressBar

javax.swing.JProgressBar progressBar

gridBagLayout1

java.awt.GridBagLayout gridBagLayout1

labelPane

javax.swing.JPanel labelPane

statusLabel

javax.swing.JLabel statusLabel

label1

javax.swing.JLabel label1

remainingLabel

javax.swing.JLabel remainingLabel

elapsedLabel

javax.swing.JLabel elapsedLabel

titledBorder1

javax.swing.border.TitledBorder titledBorder1

jobControl

JobControl jobControl

actionTerminate

JobAction actionTerminate

actionPause

JobAction actionPause

actionStart

JobAction actionStart

cat

org.apache.log4j.Category cat

Class com.developmentontheedge.jobcontrol.JobProgressBar extends javax.swing.JProgressBar implements Serializable

Package com.developmentontheedge.jobcontrol.action

Class com.developmentontheedge.jobcontrol.action.JobAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

actionListeners

java.util.Vector actionListeners

Package com.developmentontheedge.log

Class com.developmentontheedge.log.LogTextPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

textArea

javax.swing.JTextArea textArea

Package com.developmentontheedge.print

Class com.developmentontheedge.print.PagePreview extends javax.swing.JPanel implements Serializable

Serialized Fields

component

JPrintableComponent component

format

java.awt.print.PageFormat format

index

int index

Class com.developmentontheedge.print.PreviewDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

componentToPreview

javax.swing.JComponent componentToPreview

toolbar

javax.swing.JComponent toolbar

previewPanel

javax.swing.JComponent previewPanel

Class com.developmentontheedge.print.PrintAction extends javax.swing.AbstractAction implements Serializable

Class com.developmentontheedge.print.PrintPreviewAction extends javax.swing.AbstractAction implements Serializable

Class com.developmentontheedge.print.PrintSetupAction extends javax.swing.AbstractAction implements Serializable

Package ru.biosoft.access

Class ru.biosoft.access.CreateDataCollectionDefaultController extends javax.swing.JDialog implements Serializable

Serialized Fields

borderLayout1

java.awt.BorderLayout borderLayout1

pButtons

javax.swing.JPanel pButtons

flowLayout1

java.awt.FlowLayout flowLayout1

bCancel

javax.swing.JButton bCancel

bYes

javax.swing.JButton bYes

bAll

javax.swing.JButton bAll

lMessage

javax.swing.JLabel lMessage

returnValue

int returnValue

bFirst

boolean bFirst

To do:

Document it

jobControl

FunctionJobControl jobControl

Class ru.biosoft.access.DataCollectionAddUndo extends DataCollectionRemoveUndo implements Serializable

Class ru.biosoft.access.DataCollectionEvent extends java.util.EventObject implements Serializable

Serialized Fields

type

int type

dataElementName

java.lang.String dataElementName

owner

DataCollection owner

primaryEvent

DataCollectionEvent primaryEvent

Class ru.biosoft.access.DataCollectionRemoveUndo extends javax.swing.undo.AbstractUndoableEdit implements Serializable

Serialized Fields

element

DataElement element

parent

DataCollection parent

Class ru.biosoft.access.DataCollectionVetoException extends java.lang.Exception implements Serializable

Class ru.biosoft.access.IndexTable extends java.util.Hashtable implements Serializable

Serialized Fields

delimiters

java.lang.String delimiters

Delimiter characters.

Default value is: ";\t\r\n".

start

java.lang.String start

String from wich any entry is started. Default value is: "ID".

end

java.lang.String end

String by wich any entry is finished. Default value is: "//" .

startKey

java.lang.String startKey

Name of indexed startKey.

indexList

java.util.Vector indexList

The vector of sorted alphabetically field values.

indexFile

java.io.RandomAccessFile indexFile

Index file.

indexFileName

java.io.File indexFileName

Name of index file.

Class ru.biosoft.access.MemIndex extends java.util.HashMap implements Serializable

Serialized Fields

indexFileName

java.io.File indexFileName

Name of index file

valid

boolean valid

To do:

Document

Package ru.biosoft.access.repository

Class ru.biosoft.access.repository.RepositoryPane extends javax.swing.JPanel implements Serializable

Serialized Fields

model

javax.swing.tree.TreeModel model

jTree

javax.swing.JTree jTree

rootDataCollection

DataCollection rootDataCollection

actionsProvider

ActionsProvider actionsProvider

listeners

java.util.Vector listeners

Package ru.biosoft.access.search

Class ru.biosoft.access.search.DataSearch extends javax.swing.JFrame implements Serializable

Serialized Fields

primaryCollection

DataCollection primaryCollection

tabularInspector

com.beanexplorer.swing.TabularPropertyInspector tabularInspector

filterInspector

com.beanexplorer.swing.PropertyInspector filterInspector

columnsInspector

com.beanexplorer.swing.PropertyInspector columnsInspector

explorerPane

ExplorerPane explorerPane

filteringSettings

FilteringSettings filteringSettings

buttonsPanel

javax.swing.JPanel buttonsPanel

jobBar

JobProgressBar jobBar

startButton

javax.swing.JButton startButton

cancelButton

javax.swing.JButton cancelButton

Class ru.biosoft.access.search.DataSearchAction extends javax.swing.AbstractAction implements Serializable

Package ru.biosoft.access.support

Class ru.biosoft.access.support.AbstractExportDialog extends OkCancelDialog implements Serializable

Serialized Fields

frame

ApplicationFrame frame

A frame for dialog

browseTextField

BrowseTextField browseTextField

Browse text

comboBoxFormat

javax.swing.JComboBox comboBoxFormat

Format selection combobox

nameCombobox

javax.swing.JComboBox nameCombobox

Name selection combobox

checkBoxCopyFile

javax.swing.JCheckBox checkBoxCopyFile

copy file select box

checkBoxSortingSites

javax.swing.JCheckBox checkBoxSortingSites

checkBoxExportSequence

javax.swing.JCheckBox checkBoxExportSequence

showFormatComboBox

boolean showFormatComboBox

showCheckBoxCopyFile

boolean showCheckBoxCopyFile

controlPane

JobControlPane controlPane

JobControlPane to control export process.

appender

TextPaneAppender appender

dcNames

java.util.Vector dcNames

jobControl

FunctionJobControl jobControl

Class ru.biosoft.access.support.AbstractExportDialog.MPanel extends javax.swing.JPanel implements Serializable

Class ru.biosoft.access.support.AbstractImportDialog extends OkCancelDialog implements Serializable

Serialized Fields

controller

CreateDataCollectionController controller

frame

ApplicationFrame frame

A frame for dialog

browseTextField

BrowseTextField browseTextField

Browse text

Pendung:

(cher) variable browseTextField ought to be initialized in inner classes in future

comboBoxFormat

javax.swing.JComboBox comboBoxFormat

Format selection combobox

editName

javax.swing.JTextField editName

Name editor text field

checkBoxCopyFile

javax.swing.JCheckBox checkBoxCopyFile

copy file select box

haveComboBox

boolean haveComboBox

haveCheckBox

boolean haveCheckBox

menu

javax.swing.JMenuItem menu

Menu item connected with import

controlPane

JobControlPane controlPane

JobControlPane to control import process.

appender

TextPaneAppender appender

categoryList

java.lang.String[] categoryList

jobControl

FunctionJobControl jobControl

Class ru.biosoft.access.support.AbstractImportDialog.ImportController extends CreateDataCollectionDefaultController implements Serializable

Class ru.biosoft.access.support.AbstractImportDialog.MPanel extends javax.swing.JPanel implements Serializable

Class ru.biosoft.access.support.DataCollectionMultyChoiceDialog extends OkCancelDialog implements Serializable

Serialized Fields

pane

DataCollectionMultyChoicePane pane

Class ru.biosoft.access.support.DataCollectionMultyChoicePane extends javax.swing.JPanel implements Serializable

Serialized Fields

dataCollection

DataCollection dataCollection

DataCollection from wich data element names are selected.

possibleValuesModel

javax.swing.ListModel possibleValuesModel

selectedValuesModel

javax.swing.DefaultListModel selectedValuesModel

isSorted

boolean isSorted

Indicates whether selected values should be sorted.

pPossibleValues

javax.swing.JPanel pPossibleValues

lPossibleValues

javax.swing.JLabel lPossibleValues

listPossibleValues

javax.swing.JList listPossibleValues

pButtons

javax.swing.JPanel pButtons

bAdd

javax.swing.JButton bAdd

bRemove

javax.swing.JButton bRemove

bRemoveAll

javax.swing.JButton bRemoveAll

bNew

javax.swing.JButton bNew

pSelectedValues

javax.swing.JPanel pSelectedValues

lSelectedValues

javax.swing.JLabel lSelectedValues

listSelectedValues

javax.swing.JList listSelectedValues

Class ru.biosoft.access.support.NameListToComboBoxModelAdapter extends NameListToListModelAdapter implements Serializable

Serialized Fields

selectedItem

java.lang.Object selectedItem

Class ru.biosoft.access.support.NameListToListModelAdapter extends javax.swing.AbstractListModel implements Serializable

Serialized Fields

dataCollection

DataCollection dataCollection

nameList

java.util.List nameList

index

int index

Class ru.biosoft.access.support.NewDataElementDialog extends OkCancelDialog implements Serializable

Serialized Fields

dc

DataCollection dc

de

DataElement de

id

javax.swing.JTextField id

content

javax.swing.JPanel content

propertyInspector

com.beanexplorer.swing.PropertyInspector propertyInspector

Package ru.biosoft.graphics.editor

Class ru.biosoft.graphics.editor.InsertAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

actionListeners

java.util.Vector actionListeners

Action listener

Class ru.biosoft.graphics.editor.ViewEditorPane extends ViewPane implements Serializable

Serialized Fields

helper

ViewEditorHelper helper

insertActionListener

java.awt.event.ActionListener insertActionListener

insertMode

java.lang.Class insertMode

bg

javax.swing.ButtonGroup bg

selectbutton

javax.swing.JToggleButton selectbutton

toolbar

javax.swing.JToolBar toolbar

selectionEnabled

boolean selectionEnabled

initiated

boolean initiated

resizing

boolean resizing

initialRect

java.awt.Rectangle initialRect

resizingDirection

int resizingDirection

moving

boolean moving

startPoint

java.awt.Point startPoint

prevPoint

java.awt.Point prevPoint

selection

CompositeView selection

acceptingSelection

View acceptingSelection

listenerList

javax.swing.event.EventListenerList listenerList

selectionUndo

ViewEditorPane.SelectionUndo selectionUndo

Class ru.biosoft.graphics.editor.ViewPane extends javax.swing.JPanel implements Serializable

Serialized Fields

mPanel

ViewPane.MPanel mPanel

Panel on which all views are painted

at

java.awt.geom.AffineTransform at

Transformer for scaling of visual representation of all views

scale

double scale

barHor

javax.swing.JScrollBar barHor

barVert

javax.swing.JScrollBar barVert

scrollPane

javax.swing.JScrollPane scrollPane

allignToX

boolean allignToX

allignToY

boolean allignToY

cView

CompositeView cView

Storage for views

selectionManager

SelectionManager selectionManager

viewPaneListeners

java.util.Vector viewPaneListeners

listeners storage

findModel

java.lang.Object findModel

Class ru.biosoft.graphics.editor.ViewPane.MPanel extends javax.swing.JPanel implements Serializable

Class ru.biosoft.graphics.editor.ViewPaneEvent extends java.awt.event.MouseEvent implements Serializable

Serialized Fields

viewSource

View viewSource

The object on which the Event initially occurred.

viewPane

ViewPane viewPane

Package ru.biosoft.graphics.font

Class ru.biosoft.graphics.font.FontChooser extends javax.swing.JComponent implements Serializable

Serialized Fields

northPanel

javax.swing.JPanel northPanel

centerPanel

javax.swing.JPanel centerPanel

samplePanel

FontChooser.SamplePanel samplePanel

fontsList

javax.swing.JList fontsList

stylesList

javax.swing.JList stylesList

sizesList

javax.swing.JList sizesList

styles

java.util.Hashtable styles

color

java.awt.Color color

Package ru.biosoft.gui

Class ru.biosoft.gui.DocumentPane extends javax.swing.JPanel implements Serializable

Serialized Fields

tabbedPane

javax.swing.JTabbedPane tabbedPane

tabs

java.util.HashMap tabs

Class ru.biosoft.gui.EditorPartSupport extends ViewPartSupport implements Serializable

Serialized Fields

listenerList

javax.swing.event.EventListenerList listenerList

Class ru.biosoft.gui.EditorsTabbedPane extends EditorPartSupport implements Serializable

Serialized Fields

toolbar

javax.swing.JToolBar toolbar

tabPane

javax.swing.JTabbedPane tabPane

editorsManager

EditorsManager editorsManager

model

java.lang.Object model

Data (model) that is currently edited or explored.

tabs

java.util.Vector tabs

tabActions

javax.swing.Action[] tabActions

tabActionsIndex

int tabActionsIndex

modelActions

javax.swing.Action[] modelActions

modelActionsIndex

int modelActionsIndex

modelActionProvider

ActionsProvider modelActionProvider

Class ru.biosoft.gui.ExplorerPane extends EditorsTabbedPane implements Serializable

Serialized Fields

propertiesView

PropertiesView propertiesView

propertiesEditor

PropertiesEditor propertiesEditor

Class ru.biosoft.gui.HtmlEditor extends EditorPartSupport implements Serializable

Serialized Fields

htmlEditor

javax.swing.JEditorPane htmlEditor

textEditor

javax.swing.JEditorPane textEditor

preview

com.beanexplorer.web.HtmlPane preview

view

javax.swing.JTabbedPane view

actions

javax.swing.Action[] actions

Class ru.biosoft.gui.HtmlView extends com.beanexplorer.web.HtmlPane implements Serializable

Serialized Fields

action

javax.swing.Action action

model

java.lang.Object model

document

Document document

Class ru.biosoft.gui.LogPane extends ViewPartSupport implements Serializable

Serialized Fields

appender

TextPaneAppender appender

Class ru.biosoft.gui.PluggedEditorsTabbedPane extends EditorsTabbedPane implements Serializable

Class ru.biosoft.gui.PropertiesEditor extends com.beanexplorer.swing.PropertyInspector implements Serializable

Serialized Fields

action

javax.swing.Action action

document

Document document

expansionLevel

int expansionLevel

Class ru.biosoft.gui.PropertiesView extends com.beanexplorer.web.HtmlPropertyInspector implements Serializable

Serialized Fields

action

javax.swing.Action action

document

Document document

Class ru.biosoft.gui.RedoAction extends javax.swing.AbstractAction implements Serializable

Class ru.biosoft.gui.TabularPropertiesEditor extends com.beanexplorer.swing.TabularPropertyInspector implements Serializable

Serialized Fields

action

javax.swing.Action action

model

java.lang.Object model

document

Document document

Class ru.biosoft.gui.UndoAction extends javax.swing.AbstractAction implements Serializable

Class ru.biosoft.gui.ViewPartSupport extends javax.swing.JPanel implements Serializable

Serialized Fields

action

javax.swing.Action action

modelValidator

ModelValidator modelValidator

model

java.lang.Object model

document

Document document

Package ru.biosoft.gui.wizard

Class ru.biosoft.gui.wizard.WizardDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

wizardPanel

WizardPanel wizardPanel

Class ru.biosoft.gui.wizard.WizardFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

wizardPanel

WizardPanel wizardPanel

Class ru.biosoft.gui.wizard.WizardPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

prevButton

javax.swing.JButton prevButton

nextButton

javax.swing.JButton nextButton

finishButton

javax.swing.JButton finishButton

doneButton

javax.swing.JButton doneButton

cancelButton

javax.swing.JButton cancelButton

toggleCheckBox

javax.swing.JCheckBox toggleCheckBox

mainPanel

javax.swing.JPanel mainPanel

stepView

java.awt.Component stepView

propertiesView

javax.swing.JPanel propertiesView

target

WizardTarget target

steps

java.util.Vector steps

currStep

int currStep

lastCompleted

int lastCompleted

result

int result

processing

boolean processing

preferredSize

java.awt.Dimension preferredSize

owner

java.awt.Window owner

nextEnabled

boolean nextEnabled

stepReady

boolean stepReady

bEnable

boolean bEnable

leftButtonPanel

javax.swing.JPanel leftButtonPanel

rightButtonPanel

javax.swing.JPanel rightButtonPanel

Package ru.biosoft.math

Class ru.biosoft.math.ExpressionEditorDialog extends OkCancelDialog implements Serializable

Serialized Fields

editorPane

ExpressionEditorPane editorPane

Class ru.biosoft.math.ExpressionEditorPane extends PanelManager implements Serializable

Serialized Fields

viewBuilder

FormulaViewBuilder viewBuilder

viewPane

ViewPane viewPane

textPane

javax.swing.JTextPane textPane

mathMLPane

javax.swing.JTextPane mathMLPane

logPane

javax.swing.JTextPane logPane

validateButton

javax.swing.JButton validateButton

dumpButton

javax.swing.JButton dumpButton

expression

Expression expression

okButton

javax.swing.JButton okButton

The dialog can set up this property and ExpressionEditorPane will enable or disable the button depending on the status of expression parsing.

status

int status

Indicates whether edited expression is valid. Possible values: Parser.STATUS_OK, Parser.STATUS_WARNING, Parser.STATUS_ERRROR, Parser.STATUS_FATAL_ERROR or combination their combination (excluding Parser.STATUS_OK).

source

javax.swing.JTextPane source

The source of DocumentEvent, text or mathML JTextPane.

Package ru.biosoft.math.parser

Class ru.biosoft.math.parser.ParseException extends java.lang.Exception implements Serializable

Serialized Fields

specialConstructor

boolean specialConstructor

This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).

currentToken

Token currentToken

This is the last token that has been consumed successfully. If this object has been created due to a parse error, the token followng this token will (therefore) be the first error token.

expectedTokenSequences

int[][] expectedTokenSequences

Each entry in this array is an array of integers. Each array of integers represents a sequence of tokens (by their ordinal values) that is expected at this point of the parse.

tokenImage

java.lang.String[] tokenImage

This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred. This array is defined in the generated ...Constants interface.

eol

java.lang.String eol

The end of line string for this machine.

Class ru.biosoft.math.parser.TokenMgrError extends java.lang.Error implements Serializable

Serialized Fields

errorCode

int errorCode

Indicates the reason why the exception is thrown. It will have one of the above 4 values.

Package ru.biosoft.plugins.javascript

Class ru.biosoft.plugins.javascript.EvalTextArea extends javax.swing.JTextArea implements Serializable

Serialized Fields

history

java.util.Vector history

historyIndex

int historyIndex

outputMark

int outputMark

Class ru.biosoft.plugins.javascript.Global extends org.mozilla.javascript.ImporterTopLevel implements Serializable

Class ru.biosoft.plugins.javascript.JScriptConsole extends EditorPartSupport implements Serializable

Package ru.biosoft.util

Class ru.biosoft.util.ChainRuntimeException extends java.lang.RuntimeException implements Serializable

Serialized Fields

ex

java.lang.Exception ex

Chained exception

Class ru.biosoft.util.ExProperties extends java.util.Properties implements Serializable

Class ru.biosoft.util.HashMapSoftValues extends java.util.HashMap implements Serializable

Serialized Fields

checkCounter

int checkCounter

To do:

Doc

queue

java.lang.ref.ReferenceQueue queue

To do:

Doc

Class ru.biosoft.util.HashMapWeakValues extends java.util.HashMap implements Serializable

Serialized Fields

checkCounter

int checkCounter

To do:

Doc

queue

java.lang.ref.ReferenceQueue queue

To do:

Doc

Class ru.biosoft.util.OkCancelDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

result

boolean result

Result of dialog executing

parent

java.awt.Component parent

mainPanel

javax.swing.JPanel mainPanel

buttonPanel

javax.swing.JPanel buttonPanel

okButton

javax.swing.JButton okButton

cancelButton

javax.swing.JButton cancelButton

Package ru.biosoft.workbench

Class ru.biosoft.workbench.AboutAction extends javax.swing.AbstractAction implements Serializable

Class ru.biosoft.workbench.AboutDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

tabbedPanel

javax.swing.JTabbedPane tabbedPanel

splashLabel

javax.swing.JLabel splashLabel

width

int width

height

int height

resources

java.lang.String resources

pluginDescriptor

org.eclipse.core.runtime.IPluginDescriptor pluginDescriptor

Class ru.biosoft.workbench.HelpAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

helpId

java.lang.String helpId

Class ru.biosoft.workbench.PageManager extends javax.swing.JTabbedPane implements Serializable

Class ru.biosoft.workbench.WorkbenchPage extends PanelManager implements Serializable

Serialized Fields

perspective

PerspectiveDescriptor perspective

Perspective that is used to fill the page content and its initial layout.

Class ru.biosoft.workbench.WorkbenchWindow extends ApplicationFrame implements Serializable

Serialized Fields

pageManager

PageManager pageManager