Uses of Interface
ru.biosoft.access.DataCollection

Packages that use DataCollection

biouml.model
biouml.model.dynamics
biouml.model.util
biouml.plugins.cellml
biouml.plugins.ginsim
biouml.plugins.gxl
biouml.plugins.sbml
biouml.plugins.sbw
biouml.plugins.simulation
biouml.plugins.simulation.access
biouml.plugins.simulation.plot
biouml.plugins.simulation.plot.access
biouml.standard.type
biouml.standard.type.access
biouml.workbench.diagram
ru.biosoft.access	Provides classes and interfaces for data collections.
ru.biosoft.access.repository
ru.biosoft.access.search
ru.biosoft.access.support
ru.biosoft.gui.wizard
ru.biosoft.plugins
ru.biosoft.plugins.javascript

Uses of DataCollection in biouml.model

Classes in biouml.model that implement DataCollection

class	Compartment General definition of the compartment as a container for nodes and edges between them.
class	Diagram
class	EquivalentNodeGroup Group of equivalent nodes.
class	Module The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.

Fields in biouml.model declared as DataCollection

protected DataCollection

Compartment.collection Primary collection.

Methods in biouml.model that return DataCollection

static DataCollection	Node.findCommonOrigin(DataCollection first, DataCollection second)
DataCollection	Module.getCategory(java.lang.Class c)
DataCollection	Module.getDiagrams()

Methods in biouml.model with parameters of type DataCollection

static DataCollection	Node.findCommonOrigin(DataCollection first, DataCollection second)
static Diagram	Diagram.createDiagram(DiagramType type, java.lang.String diagramName, DataCollection origin)
DiagramElement	Diagram.clone(DataCollection origin, java.lang.String newName)
void	Compartment.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)
void	Compartment.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)
protected void	Compartment.remapEdge(DataCollection newParent, Edge edge, Node inNode, Node outNode)

Constructors in biouml.model with parameters of type DataCollection

Node(DataCollection parent, java.lang.String name, Base kernel)

Node(DataCollection parent, Base kernel)

Module(DataCollection primaryCollection, java.util.Properties properties)
Constructs derived data collection with primary collection.

EquivalentNodeGroup(DataCollection parent, java.lang.String name)

Edge(DataCollection parent, java.lang.String id, Base kernel, Node input, Node output)

Edge(DataCollection parent, Base kernel, Node input, Node output)

DiagramElement(DataCollection parent, java.lang.String name, Base kernel)
Constructs the diagram element.

DiagramElement(DataCollection parent, Base kernel)
Constructs the diagram element.

Diagram(DataCollection origin, Base kernel, DiagramType type)
Creates the diagram of the specified type.

Compartment(DataCollection parent, java.lang.String id, Base kernel)

Compartment(DataCollection parent, Base kernel)

Uses of DataCollection in biouml.model.dynamics

Classes in biouml.model.dynamics that implement DataCollection

class

VariablesDataCollection

Fields in biouml.model.dynamics declared as DataCollection

protected DataCollection	EModel.variables
protected DataCollection	EModel.variableRoles
protected DataCollection	EModel.parameters

Methods in biouml.model.dynamics that return DataCollection

DataCollection	EModel.getVariables()
DataCollection	EModel.getVariableRoles()
DataCollection	EModel.getParameters()

Constructors in biouml.model.dynamics with parameters of type DataCollection

VariablesDataCollection(DataCollection parent, Diagram diagram)

VariableRole(DataCollection origin, DiagramElement diagramElement, double initialValue)

VariableRole(java.lang.String name, DataCollection origin, double initialValue)
For internal usage.

Variable(java.lang.String name, DataCollection origin)

Variable(java.lang.String name, EModel model, DataCollection origin)

Uses of DataCollection in biouml.model.util

Methods in biouml.model.util that return DataCollection

static DataCollection

Framework.getModules()

Methods in biouml.model.util with parameters of type DataCollection

Diagram

DiagramXmlReader.read(DataCollection origin, Module module)

Uses of DataCollection in biouml.plugins.cellml

Methods in biouml.plugins.cellml with parameters of type DataCollection

Diagram	CellMLModelReader.read(DataCollection origin, Module module)
protected Diagram	CellMLModelReader.readDiagram(org.w3c.dom.Element element, DataCollection origin)

Constructors in biouml.plugins.cellml with parameters of type DataCollection

Species(java.lang.String name, DataCollection parent)

Species(java.lang.String name, DataCollection parent, java.lang.String type)

Reaction(DataCollection origin, java.lang.String name)

Uses of DataCollection in biouml.plugins.ginsim

Fields in biouml.plugins.ginsim declared as DataCollection

protected DataCollection

GinSimReader.origin

Uses of DataCollection in biouml.plugins.gxl

Fields in biouml.plugins.gxl declared as DataCollection

protected DataCollection

GxlReader.origin

Methods in biouml.plugins.gxl with parameters of type DataCollection

protected Diagram	GxlReader.createDiagram(java.lang.String name, DataCollection origin)
Diagram	GxlReader.readDiagram(java.io.File file, DataCollection origin)

Uses of DataCollection in biouml.plugins.sbml

Methods in biouml.plugins.sbml with parameters of type DataCollection

Diagram	SbmlModelReader.read(org.w3c.dom.Document document, java.lang.String name, DataCollection origin)
static Diagram	SbmlModelFactory.readDiagram(java.io.File file, DataCollection origin, java.lang.String diagramName)

Constructors in biouml.plugins.sbml with parameters of type DataCollection

Specie(java.lang.String name, DataCollection parent)

Specie(java.lang.String name, DataCollection parent, java.lang.String type)

Uses of DataCollection in biouml.plugins.sbw

Classes in biouml.plugins.sbw that implement DataCollection

class	SbwModule
class	SbwService
class	SbwServiceCategory
class	SbwVisiblePlugin Wrapper class to get access to SBW modules from BioUML.

Fields in biouml.plugins.sbw declared as DataCollection

protected DataCollection	SbwVisiblePlugin.sbwCategories
protected DataCollection	SbwVisiblePlugin.sbwModules

Methods in biouml.plugins.sbw that return DataCollection

DataCollection

SbwServiceMethod.getOrigin()

Constructors in biouml.plugins.sbw with parameters of type DataCollection

SbwVisiblePlugin(DataCollection parent, java.util.Properties properties)
Constructor to be used by CollectionFactory to create a Plugin.

SbwServiceCategory(DataCollection parent, java.lang.String name)

SbwModule(DataCollection parent, edu.caltech.sbw.ModuleDescriptor descriptor)

Uses of DataCollection in biouml.plugins.simulation

Methods in biouml.plugins.simulation that return DataCollection

protected DataCollection	SimulationEnginePane.getSimulationResultDC()
protected DataCollection	SimulationEnginePane.getSimulationResultDC(Module module)

Constructors in biouml.plugins.simulation with parameters of type DataCollection

SimulationResult(DataCollection origin, java.lang.String name)

Uses of DataCollection in biouml.plugins.simulation.access

Methods in biouml.plugins.simulation.access with parameters of type DataCollection

void	SimulationResultTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)

Uses of DataCollection in biouml.plugins.simulation.plot

Fields in biouml.plugins.simulation.plot declared as DataCollection

protected DataCollection	PlotPane.resultCollection
protected DataCollection	PlotEx.simulationResults
protected DataCollection	PlotEx.plots

Methods in biouml.plugins.simulation.plot that return DataCollection

DataCollection	PlotPane.getResultCollection()
DataCollection	PlotEx.getSimulationResultCollection()
protected DataCollection	PlotEx.doGetSimulationResultCollection()
DataCollection	PlotEx.getPlotCollection()
protected DataCollection	PlotEx.doGetPlotCollection()

Methods in biouml.plugins.simulation.plot with parameters of type DataCollection

void	PlotPane.setResultCollection(DataCollection resultCollection)
static Plot	Plot.createDefaultPlot(DataCollection plotCollection)

Constructors in biouml.plugins.simulation.plot with parameters of type DataCollection

Plot(java.lang.String name, DataCollection origin, java.util.List series)

Plot(java.lang.String name, DataCollection origin)

Uses of DataCollection in biouml.plugins.simulation.plot.access

Methods in biouml.plugins.simulation.plot.access with parameters of type DataCollection

void	PlotTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)

Uses of DataCollection in biouml.standard.type

Classes in biouml.standard.type that implement DataCollection

class

Reaction

Methods in biouml.standard.type that return DataCollection

DataCollection

ReferrerBeanInfo.LiteratureReferencesEditor.getDataCollection()

Methods in biouml.standard.type with parameters of type DataCollection

SpecieReference	SpecieReference.clone(DataCollection origin, java.lang.String name)
void	Reaction.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)
void	Reaction.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)

Constructors in biouml.standard.type with parameters of type DataCollection

Unit(DataCollection parent, java.lang.String name)

Substance(DataCollection origin, java.lang.String name)

Stub(java.lang.String name, DataCollection parent)

Stub(java.lang.String name, DataCollection parent, java.lang.String type)

State(DataCollection parent, java.lang.String name)

Species(DataCollection parent, java.lang.String name)

SpecieReference(DataCollection origin, java.lang.String name)

SpecieReference(DataCollection origin, java.lang.String name, java.lang.String role)

SemanticRelation(DataCollection origin, java.lang.String name)

SemanticRelation(DataCollection origin, java.lang.String name, java.lang.String relationType)

RNA(DataCollection origin, java.lang.String name)

RelationType(DataCollection parent, java.lang.String name)

Referrer(DataCollection origin, java.lang.String name)

Reaction(DataCollection origin, java.lang.String name)

Protein(DataCollection origin, java.lang.String name)

Process(DataCollection parent, java.lang.String name)

Molecule(DataCollection origin, java.lang.String name)

LiteratureReference(DataCollection parent, java.lang.String name)

KineticType(DataCollection origin, java.lang.String name)

KineticType(DataCollection origin, java.lang.String name, java.lang.String title, java.lang.String description, boolean reversible, java.lang.String function, KineticType.Element[] elements)

GenericEntity(DataCollection origin, java.lang.String name)

Gene(DataCollection origin, java.lang.String name)

Function(DataCollection parent, java.lang.String name)

DiagramReference(DataCollection origin, java.lang.String name)

DiagramInfo(DataCollection parent, java.lang.String name)

DatabaseInfo(DataCollection parent, java.lang.String name)

Constant(DataCollection parent, java.lang.String name)

Concept(DataCollection origin, java.lang.String name)

Compartment(DataCollection origin, java.lang.String name)

Cell(DataCollection parent, java.lang.String name)

Biopolymer(DataCollection origin, java.lang.String name)

BaseSupport(java.lang.String name, DataCollection parent)

BaseSupport(java.lang.String name, DataCollection parent, java.lang.String type)

Uses of DataCollection in biouml.standard.type.access

Methods in biouml.standard.type.access with parameters of type DataCollection

boolean	SubstanceSqlTransformer.init(DataCollection owner)
boolean	RNASqlTransformer.init(DataCollection owner)
boolean	RelationSqlTransformer.init(DataCollection owner)
void	ReactionTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)
boolean	ReactionSqlTransformer.init(DataCollection owner)
boolean	ProteinSqlTransformer.init(DataCollection owner)
boolean	GeneSqlTransformer.init(DataCollection owner)
boolean	DiagramSqlTransformer.init(DataCollection owner)
boolean	DatabaseInfoSqlTransformer.init(DataCollection owner)
boolean	ConceptSqlTransformer.init(DataCollection owner)
boolean	CompartmentSqlTransformer.init(DataCollection owner)
boolean	CellSqlTransformer.init(DataCollection owner)

Constructors in biouml.standard.type.access with parameters of type DataCollection

TitleSqlIndex(DataCollection dc)

Uses of DataCollection in biouml.workbench.diagram

Fields in biouml.workbench.diagram declared as DataCollection

protected DataCollection

NewDiagramDialog.repository

Methods in biouml.workbench.diagram that return DataCollection

protected DataCollection

DiagramEditorHelper.getOrigin(java.awt.Point pt)

Constructors in biouml.workbench.diagram with parameters of type DataCollection

NewDiagramDialog(javax.swing.JFrame frame, java.lang.String title, DataCollection repository, Module module)

Uses of DataCollection in ru.biosoft.access

Subinterfaces of DataCollection in ru.biosoft.access

interface

CollectionUnion Collection that is union of several collections.

Classes in ru.biosoft.access that implement DataCollection

class	AbstractDataCollection This abstract class provides default implementations for most of the methods in the DataCollection interface.
class	DataCollectionUnion Collection that is union of several collections.
class	DataCollectionUnion2
class	DerivedDataCollection General class for derived data collection.
class	EntryCollection
class	FileCollection FileCollection is DataCollection for storing FileDataElement objects .
class	FileEntryCollection Implements simple access procedures to databases in EMBL-like format.
class	FileEntryCollection2
class	FilteredDataCollection
class	LocalRepository LocalRepository creates hierarchical DataCollection.
class	SqlDataCollection DataCollection which store all information in SQL DBMS.
class	TransformedDataCollection Implemnation note: we are not propagate DataCollectionEvents, because this work is done by primary DataCollection (it has the same parent).
class	VectorDataCollection DataCollection based on Vector ( DataElement's is stored in Vector ).

Fields in ru.biosoft.access declared as DataCollection

protected DataCollection	SqlTransformerSupport.owner
protected DataCollection	DerivedDataCollection.primaryCollection Primary collection.
protected DataCollection	AbstractTransformer.primaryCollection Data collection of input data elements
protected DataCollection	AbstractTransformer.transformedCollection Data collection of output data elements

Methods in ru.biosoft.access that return DataCollection

DataCollection	Transformer.getTransformedCollection() Return data collection which contain input data element.
DataCollection	Transformer.getPrimaryCollection() Return data collection which contain output data element.
DataCollection	Repository.createDataCollection(java.lang.String name, java.util.Properties properties, java.lang.String subDir, java.lang.String configName, java.io.File[] files, boolean copy, CreateDataCollectionController controller) Creates new DataCollection.
DataCollection	MutableDataElementSupport.getOrigin()
DataCollection	LocalRepository.createDataCollection(java.lang.String name, java.util.Properties properties, java.lang.String subDir, java.lang.String configName, java.io.File[] files, boolean copy, CreateDataCollectionController controller) Creates new DataCollection with specified subdir (if not null) and config file name.
DataCollection	DerivedDataCollection.getPrimaryCollection()
DataCollection	DataElementSupport.getOrigin() Return origin data collection for this data element.
DataCollection	DataElement.getOrigin() Returns the collection this element belongs to.
DataCollection	DataCollectionEvent.getOwner()
static DataCollection	CollectionFactory.createCollection(DataCollection parent, java.util.Properties properties) Creates DataCollection with the specified parent and properties.
static DataCollection	CollectionFactory.getDataCollection(java.lang.String completeName) Returns the data collection with the speicified complete name relative of one of the data collection from data collections registered in root hash map.
static DataCollection	CollectionFactory.createRepository(java.lang.String path)
static DataCollection	CollectionFactory.createTempMemoryCollection()
static DataCollection	CollectionFactory.createTransformedCollection(Repository parent, java.lang.String name, java.lang.Class transformerClass, java.lang.Class dataElementType, java.lang.String imgName, java.lang.String childrenImage, java.lang.String fileFilter, java.lang.String startTag, java.lang.String idTag, java.lang.String endTag, java.lang.String subDir)
static DataCollection	CollectionFactory.createDerivedCollection(Repository parent, java.lang.String name, java.util.Properties primary, java.util.Properties derived, java.lang.String subDir)
static DataCollection	CollectionFactory.createTransformedFileCollection(LocalRepository parent, java.lang.String name, java.lang.String filter, java.lang.Class transformerClass)
DataCollection	AbstractTransformer.getPrimaryCollection() Gets primary data collection connected with transformer.
DataCollection	AbstractTransformer.getTransformedCollection() Gets transformed data collection connected with transformer.

Methods in ru.biosoft.access with parameters of type DataCollection

void	Transformer.init(DataCollection dcInput, DataCollection dcOutput) Initialize transformer for support optional methods.
boolean	SqlTransformerSupport.init(DataCollection owner)
boolean	SqlTransformer.init(DataCollection owner) Initialize transformer.
java.util.List	QueryFilter.doQuery(DataCollection dc)
void	DataCollectionUnion2.addCollection(DataCollection child)
void	DataCollectionUnion.addCollection(DataCollection dc)
void	DataCollection.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)
void	DataCollection.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)
void	CollectionUnion.addCollection(DataCollection dc) Add all elements from specified collection to union.
static DataCollection	CollectionFactory.createCollection(DataCollection parent, java.util.Properties properties) Creates DataCollection with the specified parent and properties.
static void	CollectionFactory.releaseCollection(DataCollection dataCollection) Releases all element of DataCollection DataCollection.
static void	CollectionFactory.registerRoot(DataCollection dc) Register DataCollection in root HashMap.
static void	CollectionFactory.unregisterRoot(DataCollection dataCollection) Unegister DataCollection in root HashMap.
static DataElement	CollectionFactory.getDataElement(java.lang.String relativeName, DataCollection ancestor) Returns the DataElement with the specified name.
static java.lang.String	CollectionFactory.getRelativeName(DataElement child, DataCollection ancestor) Returns complete name of DataElement relative its ancestor.
static void	CollectionFactory.copyDataCollection(DataCollection source, DataCollection dest, FunctionJobControl jc, java.lang.String successMessage)
void	AbstractTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection) Initialize transformer for support optional methods.
protected void	AbstractDataCollection.fireElementWillChange(java.lang.Object source, DataCollection owner, java.lang.String dataElementName, DataCollectionEvent primaryEvent) Call DataCollectionListener.elementWillChange(DataCollectionEvent) for all listeners.
protected void	AbstractDataCollection.fireElementChanged(java.lang.Object source, DataCollection owner, java.lang.String dataElementName, DataCollectionEvent primaryEvent) AbstractDataCollection subclasses must call this method after a data element of the collection change.
void	AbstractDataCollection.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)
void	AbstractDataCollection.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)

Constructors in ru.biosoft.access with parameters of type DataCollection

VectorDataCollection(DataCollection parent, java.util.Properties properties)
Constructor to be used by CollectionFactory to create VectorDataCollection.

VectorDataCollection(java.lang.String name, DataCollection parent, java.util.Properties properties)
Constructs data collection with specified name and parent.

TransformedDataCollection(DataCollection parent, java.util.Properties properties)
Constructs transformed data collection with parent.

SqlDataCollection(DataCollection parent, java.util.Properties properties)
Standart constructor for creating data collection.

MutableDataElementSupport(java.lang.String name, DataCollection origin)

LocalRepository(DataCollection parent, java.util.Properties properties)
Constructs LocalRepository.

FilteredDataCollection(DataCollection parent, java.util.Properties properties)
Constructor to be used by CollectionFactory.

FilteredDataCollection(DataCollection parent, java.lang.String name, DataCollection primaryCollection, Filter filter, FunctionJobControl jobControl, java.util.Properties properties)
Creates FilteredDataCollection with the specified parent, name, primary data collection and filter.

FileEntryCollection2(DataCollection parent, java.util.Properties properties)

FileEntryCollection(DataCollection parent, java.util.Properties properties)
Loads the data collection and its indexes (currently only for id).

FileDataElement(java.lang.String name, DataCollection origin, java.io.File parent)
Constructs FileDataElement with specified name,parent DataCollection,and parent subdirectory

FileDataElement(java.lang.String name, DataCollection origin, java.lang.String parent)
Constructs FileDataElement with specified name,parent DataCollection,and name of parent subdirectory

FileCollection(DataCollection parent, java.util.Properties properties)
Constructs data collection with parent.

EntryCollection(DataCollection parent, java.util.Properties properties)
Standard data collection constructor.

Entry(DataCollection pParent, java.lang.String pName, java.lang.String pData, java.lang.String pFormat)
Construct data element.

Entry(DataCollection pParent, java.lang.String pName, java.lang.String pData)
Construct data element with Entry.TEXT_FORMAT.

Entry(DataCollection parent, java.lang.String name, java.io.File pFile, long pOffset, long pSize)
Construct big data element with Entry.TEXT_FORMAT.

DerivedDataCollection(DataCollection parent, java.util.Properties properties)
Constructor to be used by CollectionFactory.

DerivedDataCollection(DataCollection parent, java.lang.String name, DataCollection primaryDC, java.util.Properties properties)
Constructs DerivedDataCollection with the parent, name and primary data collection.

DefaultQuerySystem(DataCollection dc)

DataElementSupport(java.lang.String name, DataCollection origin)
Construct data element.

DataElementRef(java.lang.String name, DataCollection origin, java.lang.String elementName)

DataCollectionUnion2(DataCollection dc, java.util.Properties properties)

DataCollectionUnion2(DataCollection[] collections, java.util.Properties properties)

DataCollectionUnion(DataCollection dc, java.util.Properties properties)
Make union of all collections contained in specified data collection.

DataCollectionRemoveUndo(DataElement elementWillRemove, DataCollection parent)

DataCollectionInfo(DataCollection dc, java.util.Properties properties, org.apache.log4j.Category cat)

DataCollectionEvent(java.lang.Object source, int type, DataCollection owner, java.lang.String name, DataCollectionEvent primaryEvent)
Constructs the DataCollectionEvent object.

DataCollectionAddUndo(DataElement elementWillAdd, DataCollection parent)

AbstractDataCollection(DataCollection parent, java.util.Properties properties)
Constructor to be used by CollectionFactory to creata DataCollection.

AbstractDataCollection(java.lang.String name, DataCollection parent, java.util.Properties properties)
Constructs data collection with specified name and parent.

Uses of DataCollection in ru.biosoft.access.repository

Fields in ru.biosoft.access.repository declared as DataCollection

protected DataCollection	RepositoryPane.rootDataCollection
protected DataCollection	DataCollectionTreeModelAdapter.root

Methods in ru.biosoft.access.repository that return DataCollection

DataCollection

RepositoryPane.getRootDataCollection()

Constructors in ru.biosoft.access.repository with parameters of type DataCollection

RepositoryPane(DataCollection repository)

Uses of DataCollection in ru.biosoft.access.search

Fields in ru.biosoft.access.search declared as DataCollection

protected DataCollection

DataSearch.primaryCollection

Constructors in ru.biosoft.access.search with parameters of type DataCollection

DataSearch(java.lang.String title, DataCollection collection)

Uses of DataCollection in ru.biosoft.access.support

Fields in ru.biosoft.access.support declared as DataCollection

protected DataCollection	NewDataElementDialog.dc
protected DataCollection	DataCollectionMultyChoicePane.dataCollection DataCollection from wich data element names are selected.

Methods in ru.biosoft.access.support that return DataCollection

abstract DataCollection	DataCollectionMultyChoicePropertyEditor.getDataCollection() Should return the DataCollection containing possible values.
DataCollection	DatabaseEntry.getOrigin()

Methods in ru.biosoft.access.support with parameters of type DataCollection

static java.lang.String	IdGenerator.generateUniqueName(DataCollection dc, java.text.DecimalFormat formatter)
void	BeanInfoEntryTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection) Initialize transformer.

Constructors in ru.biosoft.access.support with parameters of type DataCollection

NewDataElementDialog(java.awt.Component parent, java.lang.String title, DataCollection dc)

NameListToListModelAdapter(DataCollection dataCollection)

NameListToComboBoxModelAdapter(DataCollection dataCollection)

DataCollectionRowModelAdapter(DataCollection dc)

DataCollectionMultyChoicePane(DataCollection dc, java.lang.String[] selectedValues, boolean isSorted)

DataCollectionMultyChoiceDialog(java.awt.Component parent, java.lang.String title, DataCollection dc, java.lang.String[] selectedValues, boolean isSorted)

DatabaseEntry(DataCollection origin, java.lang.String name, Entry entry)

Uses of DataCollection in ru.biosoft.gui.wizard

Methods in ru.biosoft.gui.wizard that return DataCollection

DataCollection	WizardTarget.getSequences()
DataCollection	WizardTarget.getProfiles()

Uses of DataCollection in ru.biosoft.plugins

Classes in ru.biosoft.plugins that implement DataCollection

class	Plugins This class is used to show 'visible' plugins in plugins tab of repository pane.
class	VisiblePlugin Superclass for all 'visible' plugins.

Methods in ru.biosoft.plugins that return DataCollection

static DataCollection

Plugins.getPlugins()

Constructors in ru.biosoft.plugins with parameters of type DataCollection

VisiblePlugin(DataCollection parent, java.util.Properties properties)
Constructor to be used by CollectionFactory to create a Plugin.

Uses of DataCollection in ru.biosoft.plugins.javascript

Classes in ru.biosoft.plugins.javascript that implement DataCollection

class	ClassInfo
class	HostObjectInfo Provides description of JavaScript host object.
class	JScriptVisiblePlugin Utility class used as root tree for JavaScript functions and host objects.

Methods in ru.biosoft.plugins.javascript that return DataCollection

DataCollection	JScriptVisiblePlugin.getFunctions()
DataCollection	JScriptVisiblePlugin.getHostObjects()

Methods in ru.biosoft.plugins.javascript with parameters of type DataCollection

static void	JScriptContext.loadFunctionExtensions(java.lang.String extensionPointId, DataCollection functions) Load all executable extensions for the specified extension point.
static void	JScriptContext.defineFunction(org.eclipse.core.runtime.IConfigurationElement element, org.mozilla.javascript.Context context, org.mozilla.javascript.ScriptableObject scope, DataCollection functions)
static void	JScriptContext.loadHostObjectExtensions(java.lang.String extensionPointId, DataCollection hostObjects)
static void	JScriptContext.defineHostObject(org.eclipse.core.runtime.IConfigurationElement element, org.mozilla.javascript.Context context, org.mozilla.javascript.ScriptableObject scope, DataCollection hostObjects)

Constructors in ru.biosoft.plugins.javascript with parameters of type DataCollection

PropertyInfo(java.lang.String name, DataCollection parent)
Creates info for the specified property.

JScriptVisiblePlugin(DataCollection parent, java.util.Properties properties)
Constructor to be used by CollectionFactory to create a Plugin.

HostObjectInfo(java.lang.String name, DataCollection parent)
Creates info for the specified host object.

FunctionInfo(java.lang.String name, DataCollection parent)
Creates info for the specified JavaScript function.

ClassInfo(java.lang.String name, DataCollection parent)
Creates info for the specified Java class.