biouml.standard.type
Class Species

java.lang.Object
  com.beanexplorer.beans.Option
      ru.biosoft.access.MutableDataElementSupport
          biouml.standard.type.Species

All Implemented Interfaces:

DataElement, MutableDataElement

public class Species

extends MutableDataElementSupport

General definition for 'Species' concept. Generally, species latin name is its identifier as DataElement, thus methods MutableDataElementSupport.getName() and getLatinName() should returns the same value.

Pendung:

DataElement.origin should reffer to species classification.

Field Summary

Fields inherited from class ru.biosoft.access.MutableDataElementSupport

name

Fields inherited from class com.beanexplorer.beans.Option

notificationEnabled, propagationEnabled

Constructor Summary

Species(DataCollection parent, java.lang.String name)

Method Summary

java.lang.String	getAbbreviation() Returns species abbreviation used in gene and proteine identifiers.
java.lang.String	getCommonName() Returns species common name (generally english), for example 'mouse'.
java.lang.String	getDescription() Returns species description.
java.lang.String	getLatinName() Returns species latin name, for example 'Mus musculus'.
void	setAbbreviation(java.lang.String abbreviation)
void	setCommonName(java.lang.String commonName)
void	setDescription(java.lang.String description)

Methods inherited from class ru.biosoft.access.MutableDataElementSupport

getName, getOrigin, toString

Methods inherited from class com.beanexplorer.beans.Option

addPropertyChangeListener, copyListenersTo, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getParent, isNotificationEnabled, isPropagationEnabled, removePropertyChangeListener, setNotificationEnabled, setParent, setPropagationEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ru.biosoft.access.MutableDataElement

addPropertyChangeListener, removePropertyChangeListener

Constructor Detail

Species

public Species(DataCollection parent,
               java.lang.String name)

Method Detail

getLatinName

public java.lang.String getLatinName()

Returns species latin name, for example 'Mus musculus'.

getCommonName

public java.lang.String getCommonName()

Returns species common name (generally english), for example 'mouse'.

setCommonName

public void setCommonName(java.lang.String commonName)

getAbbreviation

public java.lang.String getAbbreviation()

Returns species abbreviation used in gene and proteine identifiers. Generally it is two letter species abrevations, for example 'Mm' for 'Mus musculus'.

setAbbreviation

public void setAbbreviation(java.lang.String abbreviation)

getDescription

public java.lang.String getDescription()

Returns species description. Generally it is some short comment.

setDescription

public void setDescription(java.lang.String description)