LiteratureReference

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biouml.standard.type
Class LiteratureReference

java.lang.Object
  com.beanexplorer.beans.Option
      ru.biosoft.access.MutableDataElementSupport
          biouml.standard.type.LiteratureReference

All Implemented Interfaces:: DataElement, MutableDataElement

public class LiteratureReference
extends MutableDataElementSupport

Defines coomon properties of literature reference. Our format is based on MEDLINE (PubMed) literature reference format. Here we use major fields of MEDLINE and ommit some accessory fields. From the other hand we add some utility fields allowing a user to organize and categorize references by user defined themes, key words and importance, as well as to store user comments and related URLs.

Pendung:: inherit from GenericEntity. http://www.ncbi.nlm.nih.gov/entrez/utils/pmfetch.fcgi?db=PubMed&id=12075356&report=MEDLINE&mode=text

Field Summary
`int`	`importance` The reference importance.
`protected static org.apache.log4j.Category`	`log`
`protected static java.lang.String`	`medlineQuery`

Fields inherited from class ru.biosoft.access.MutableDataElementSupport

name

Fields inherited from class com.beanexplorer.beans.Option

notificationEnabled, propagationEnabled

Constructor Summary
`LiteratureReference(DataCollection parent, java.lang.String name)`

Method Summary
`protected java.lang.String`	`generateReferenceId()` Generates unique human readable name for the literature reference.
`java.lang.String`	`getAffilation()`
`protected java.lang.String`	`getAuthorLastName(java.lang.String author)`
`java.lang.String`	`getAuthors()`
`java.lang.String`	`getComment()`
`java.lang.String`	`getFullTextURL()`
`int`	`getImportance()`
`java.lang.String`	`getIssue()`
`java.lang.String`	`getJournalTitleAbbrevation()`
`java.lang.String`	`getKeywords()`
`java.lang.String`	`getLanguage()`
`java.lang.String`	`getMedlineId()`
`java.lang.String`	`getPagination()`
`java.lang.String`	`getPublicationAbstract()`
`java.lang.String`	`getPublicationDate()`
`java.lang.String`	`getPublicationType()`
`protected java.lang.String`	`getPublicationYear()`
`java.lang.String`	`getPubMedId()`
`java.lang.String`	`getRelatedURLs()`
`java.lang.String`	`getSource()` Returns composite field containing bibliographic information.
`java.lang.String`	`getTheme()`
`java.lang.String`	`getTitle()`
`java.lang.String`	`getVolume()`
`protected void`	`initFromMedline(java.lang.String name)`
`void`	`setAffilation(java.lang.String affilation)`
`void`	`setAuthors(java.lang.String authors)`
`void`	`setComment(java.lang.String comment)`
`void`	`setFullTextURL(java.lang.String fullTextURL)`
`void`	`setImportance(int importance)`
`void`	`setIssue(java.lang.String issue)`
`void`	`setJournalTitleAbbrevation(java.lang.String journalTitleAbbrevation)`
`void`	`setKeywords(java.lang.String keywords)`
`void`	`setLanguage(java.lang.String language)`
`void`	`setMedlineId(java.lang.String medlineId)`
`void`	`setPagination(java.lang.String pagination)`
`void`	`setPublicationAbstract(java.lang.String publicationAbstract)`
`void`	`setPublicationDate(java.lang.String publicationDate)`
`void`	`setPublicationType(java.lang.String publicationType)`
`void`	`setPubMedId(java.lang.String pubMedId)`
`void`	`setRelatedURLs(java.lang.String relatedURLs)`
`void`	`setTheme(java.lang.String theme)`
`void`	`setTitle(java.lang.String title)`
`void`	`setVolume(java.lang.String volume)`

Methods inherited from class ru.biosoft.access.MutableDataElementSupport

getName, getOrigin, toString

Methods inherited from class com.beanexplorer.beans.Option

addPropertyChangeListener, copyListenersTo, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getParent, isNotificationEnabled, isPropagationEnabled, removePropertyChangeListener, setNotificationEnabled, setParent, setPropagationEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ru.biosoft.access.MutableDataElement

addPropertyChangeListener, removePropertyChangeListener

Field Detail

log

protected static org.apache.log4j.Category log

medlineQuery

protected static java.lang.String medlineQuery

importance

public int importance

The reference importance. Using this property user can organise references by their importance.

Constructor Detail