biouml.standard.type
Class KineticType

java.lang.Object
  com.beanexplorer.beans.Option
      ru.biosoft.access.MutableDataElementSupport
          biouml.standard.type.KineticType

All Implemented Interfaces:

DataElement, MutableDataElement

public class KineticType

extends MutableDataElementSupport

Definition of KinetReactionType defines: - meta information about reaction

To do:

high check validity of kinetic function

Pendung:

to be extended from Referrer, literature references

Nested Class Summary

static class	KineticType.Element This class is used to specify roles for each element in kinetic function.
static class	KineticType.ElementBeanInfo

Field Summary

protected java.lang.String	description The reaction description in text or HTML format.
protected KineticType.Element[]	elements Kinetic function elements.
protected java.lang.String	function Kinetic function that specifies the reaction rate.
protected boolean	reversible Indicates whether this reaction is reversible.
protected java.lang.String	title Short kinetic type name to be used in the diagram as an diagram element title.

Fields inherited from class ru.biosoft.access.MutableDataElementSupport

name

Fields inherited from class com.beanexplorer.beans.Option

notificationEnabled, propagationEnabled

Constructor Summary

KineticType(DataCollection origin, java.lang.String name)

KineticType(DataCollection origin, java.lang.String name, java.lang.String title, java.lang.String description, boolean reversible, java.lang.String function, KineticType.Element[] elements)

Method Summary

KineticType.Element[]	getConstants()
java.lang.String	getDescription()
KineticType.Element[]	getElements()
KineticType.Element[]	getElements(java.lang.String type) Returns elements of the specified type.
java.lang.String	getFunction()
KineticType.Element[]	getModifers()
KineticType.Element[]	getProducts()
KineticType.Element[]	getReactants()
java.lang.String	getTitle()
boolean	isReversible()
protected void	parseFunction() Parse new kinetic function.
void	setDescription(java.lang.String description)
void	setElements(KineticType.Element[] elements)
void	setFunction(java.lang.String function)
void	setReversible(boolean reversible)
void	setTitle(java.lang.String title)

Methods inherited from class ru.biosoft.access.MutableDataElementSupport

getName, getOrigin, toString

Methods inherited from class com.beanexplorer.beans.Option

addPropertyChangeListener, copyListenersTo, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getParent, isNotificationEnabled, isPropagationEnabled, removePropertyChangeListener, setNotificationEnabled, setParent, setPropagationEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ru.biosoft.access.MutableDataElement

addPropertyChangeListener, removePropertyChangeListener

Field Detail

title

protected java.lang.String title

Short kinetic type name to be used in the diagram as an diagram element title.

description

protected java.lang.String description

The reaction description in text or HTML format.

reversible

protected boolean reversible

Indicates whether this reaction is reversible.

function

protected java.lang.String function

Kinetic function that specifies the reaction rate.

elements

protected KineticType.Element[] elements

Kinetic function elements.

Constructor Detail

KineticType

public KineticType(DataCollection origin,
                   java.lang.String name)

KineticType

public KineticType(DataCollection origin,
                   java.lang.String name,
                   java.lang.String title,
                   java.lang.String description,
                   boolean reversible,
                   java.lang.String function,
                   KineticType.Element[] elements)

Method Detail

getTitle

public java.lang.String getTitle()

setTitle

public void setTitle(java.lang.String title)

getDescription

public java.lang.String getDescription()

setDescription

public void setDescription(java.lang.String description)

isReversible

public boolean isReversible()

setReversible

public void setReversible(boolean reversible)

getFunction

public java.lang.String getFunction()

setFunction

public void setFunction(java.lang.String function)

getElements

public KineticType.Element[] getElements()

setElements

public void setElements(KineticType.Element[] elements)

getConstants

public KineticType.Element[] getConstants()

getReactants

public KineticType.Element[] getReactants()

getProducts

public KineticType.Element[] getProducts()

getModifers

public KineticType.Element[] getModifers()

getElements

public KineticType.Element[] getElements(java.lang.String type)

Returns elements of the specified type.

parseFunction

protected void parseFunction()

Parse new kinetic function.