biouml.standard.filter
Class BiopolimerDiagramFilter

java.lang.Object
  com.beanexplorer.beans.Option
      biouml.model.AbstractFilter
          biouml.standard.filter.BiopolimerDiagramFilter

All Implemented Interfaces:

DiagramFilter

public class BiopolimerDiagramFilter

extends AbstractFilter

Common purpose diagram filter allowing to filter Biopolimers by species, cell types and inducers.

Pendung:

whether CompositeHighlighActions can contain several HighlightActions with the same color or they should be joined into one?, whether we should change EquivalentNodeGroup title (specie list) like GeneNet if we hide some object from the group?

Nested Class Summary

static class	BiopolimerDiagramFilter.CellTypeFilter
static class	BiopolimerDiagramFilter.CellTypeFilterBeanInfo
static class	BiopolimerDiagramFilter.InducerFilter
static class	BiopolimerDiagramFilter.InducerFilterBeanInfo
static class	BiopolimerDiagramFilter.SpeciesFilter
static class	BiopolimerDiagramFilter.SpeciesFilterBeanInfo

Field Summary

Fields inherited from class com.beanexplorer.beans.Option

notificationEnabled, propagationEnabled

Constructor Summary

BiopolimerDiagramFilter(Diagram diagram)

Method Summary

protected void	addFilterControl(ValueActionFilter filter, java.lang.String name, java.lang.String groupWith)
protected void	collectDiagramInfo(Compartment comp) Build list of all species in the diagram.
BiopolimerDiagramFilter.CellTypeFilter	getCellTypeFilter()
java.lang.String[]	getDiagramCellTypesList()
java.lang.String[]	getDiagramInducersList()
java.lang.String[]	getDiagramSpeciesList()
BiopolimerDiagramFilter.InducerFilter	getInducerFilter()
protected Action	getNodeAction(Node node)
java.awt.Component	getOptionsControl() returns visual control to set up the filter options.
BiopolimerDiagramFilter.SpeciesFilter	getSpeciesFilter()
boolean	isEnabled() Indicates whether a filter should be used.
protected Action	mergeActions(Action action1, Action action2)
protected static java.lang.String	normaliseSpecies(java.lang.String species)
protected void	processGroup(EquivalentNodeGroup group)
protected void	processNode(Node node) Should high or highlight node depending on filter settings.
protected void	restoreView(DiagramElement de)
void	setCellTypeFilter(BiopolimerDiagramFilter.CellTypeFilter filter) This methods used only to allow child properties to be modefied in PropertyInspector.
void	setInducerFilter(BiopolimerDiagramFilter.InducerFilter filter) This methods used only to allow child properties to be modefied in PropertyInspector.
void	setSpeciesFilter(BiopolimerDiagramFilter.SpeciesFilter filter) This methods used only to allow child properties to be modefied in PropertyInspector.

Methods inherited from class biouml.model.AbstractFilter

apply, restoreView, setEnabled

Methods inherited from class com.beanexplorer.beans.Option

addPropertyChangeListener, copyListenersTo, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getParent, isNotificationEnabled, isPropagationEnabled, removePropertyChangeListener, setNotificationEnabled, setParent, setPropagationEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BiopolimerDiagramFilter

public BiopolimerDiagramFilter(Diagram diagram)

Method Detail

isEnabled

public boolean isEnabled()

Description copied from interface: DiagramFilter

Indicates whether a filter should be used.

Specified by:

isEnabled in interface DiagramFilter

Overrides:

isEnabled in class AbstractFilter

getOptionsControl

public java.awt.Component getOptionsControl()

returns visual control to set up the filter options.

addFilterControl

protected void addFilterControl(ValueActionFilter filter,
                                java.lang.String name,
                                java.lang.String groupWith)

processNode

protected void processNode(Node node)

Description copied from class: AbstractFilter

Should high or highlight node depending on filter settings.

Specified by:

processNode in class AbstractFilter

getNodeAction

protected Action getNodeAction(Node node)

processGroup

protected void processGroup(EquivalentNodeGroup group)

mergeActions

protected Action mergeActions(Action action1,
                              Action action2)

restoreView

protected void restoreView(DiagramElement de)

Overrides:

restoreView in class AbstractFilter

collectDiagramInfo

protected void collectDiagramInfo(Compartment comp)

Build list of all species in the diagram.

Pendung:

situation if species field is composite and contains list of species

getDiagramSpeciesList

public java.lang.String[] getDiagramSpeciesList()

getDiagramCellTypesList

public java.lang.String[] getDiagramCellTypesList()

getDiagramInducersList

public java.lang.String[] getDiagramInducersList()

normaliseSpecies

protected static java.lang.String normaliseSpecies(java.lang.String species)

getSpeciesFilter

public BiopolimerDiagramFilter.SpeciesFilter getSpeciesFilter()

setSpeciesFilter

public void setSpeciesFilter(BiopolimerDiagramFilter.SpeciesFilter filter)

This methods used only to allow child properties to be modefied in PropertyInspector.

getCellTypeFilter

public BiopolimerDiagramFilter.CellTypeFilter getCellTypeFilter()

setCellTypeFilter

public void setCellTypeFilter(BiopolimerDiagramFilter.CellTypeFilter filter)

This methods used only to allow child properties to be modefied in PropertyInspector.

getInducerFilter

public BiopolimerDiagramFilter.InducerFilter getInducerFilter()

setInducerFilter

public void setInducerFilter(BiopolimerDiagramFilter.InducerFilter filter)

This methods used only to allow child properties to be modefied in PropertyInspector.