biouml.standard.diagram
Class PathwaySimulationDiagramViewBuilder

java.lang.Object
  biouml.model.DefaultDiagramViewBuilder
      biouml.standard.diagram.PathwayDiagramViewBuilder
          biouml.standard.diagram.PathwaySimulationDiagramViewBuilder

All Implemented Interfaces:

DiagramViewBuilder

Direct Known Subclasses:

CellMLDiagramViewBuilder, SbmlDiagramViewBuilder

public class PathwaySimulationDiagramViewBuilder

extends PathwayDiagramViewBuilder

Field Summary

protected FormulaViewBuilder

formulaViewBuilder

Fields inherited from class biouml.model.DefaultDiagramViewBuilder

log

Constructor Summary

PathwaySimulationDiagramViewBuilder()

Method Summary

DiagramViewOptions	createDefaultDiagramViewOptions()
protected boolean	createEquationView(CompositeView view, Node node, PathwaySimulationDiagramViewOptions options, java.awt.Graphics g)
protected boolean	createEventView(CompositeView eventView, Node node, PathwaySimulationDiagramViewOptions options, java.awt.Graphics g)
protected View	createMathView(Role role, java.lang.String math, PathwaySimulationDiagramViewOptions options, java.awt.Graphics g)
protected boolean	createNodeCoreView(CompositeView container, Node node, DiagramViewOptions options, java.awt.Graphics g)
CompositeView	createNodeView(Node node, DiagramViewOptions options, java.awt.Graphics g)
protected void	createReactionTitle(DiagramElement reactionNode, PathwayDiagramViewOptions options, java.awt.Graphics g)
protected boolean	createStateView(CompositeView stateView, Node node, PathwaySimulationDiagramViewOptions options, java.awt.Graphics g)
protected Diagram	getDiagram(DiagramElement de)

Methods inherited from class biouml.standard.diagram.PathwayDiagramViewBuilder

createCellCoreView, createConceptCoreView, createDiagramView, createEdgeView, createEquivalentNodeGroupView, createFunctionCoreView, createGeneCoreView, createProcessCoreView, createProteinCoreView, createReactionCoreView, createReactionTitles, createRNACoreView, createSemanticRelationView, createStateCoreView, createSubstanceCoreView, doLocateReaction, getReactionBrush, getRelationEndTip, getRelationPen, getRelationStartTip, locateReaction

Methods inherited from class biouml.model.DefaultDiagramViewBuilder

buildNodes, calcAttachmentPoints, createCompartmentView, createNoteView, doCreateCompartmentView, getIcon, getIcon, hideElement, isReaction, moveNode, proportion, removeElement

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

formulaViewBuilder

protected FormulaViewBuilder formulaViewBuilder

Constructor Detail

PathwaySimulationDiagramViewBuilder

public PathwaySimulationDiagramViewBuilder()

Method Detail

createDefaultDiagramViewOptions

public DiagramViewOptions createDefaultDiagramViewOptions()

Specified by:

createDefaultDiagramViewOptions in interface DiagramViewBuilder

Overrides:

createDefaultDiagramViewOptions in class PathwayDiagramViewBuilder

createNodeCoreView

protected boolean createNodeCoreView(CompositeView container,
                                     Node node,
                                     DiagramViewOptions options,
                                     java.awt.Graphics g)

Overrides:

createNodeCoreView in class PathwayDiagramViewBuilder

createNodeView

public CompositeView createNodeView(Node node,
                                    DiagramViewOptions options,
                                    java.awt.Graphics g)

Specified by:

createNodeView in interface DiagramViewBuilder

Overrides:

createNodeView in class PathwayDiagramViewBuilder

createReactionTitle

protected void createReactionTitle(DiagramElement reactionNode,
                                   PathwayDiagramViewOptions options,
                                   java.awt.Graphics g)

Overrides:

createReactionTitle in class PathwayDiagramViewBuilder

getDiagram

protected Diagram getDiagram(DiagramElement de)

createMathView

protected View createMathView(Role role,
                              java.lang.String math,
                              PathwaySimulationDiagramViewOptions options,
                              java.awt.Graphics g)

createEventView

protected boolean createEventView(CompositeView eventView,
                                  Node node,
                                  PathwaySimulationDiagramViewOptions options,
                                  java.awt.Graphics g)

createEquationView

protected boolean createEquationView(CompositeView view,
                                     Node node,
                                     PathwaySimulationDiagramViewOptions options,
                                     java.awt.Graphics g)

createStateView

protected boolean createStateView(CompositeView stateView,
                                  Node node,
                                  PathwaySimulationDiagramViewOptions options,
                                  java.awt.Graphics g)