biouml.standard.diagram
Class PathwayDiagramViewOptions

java.lang.Object
  com.beanexplorer.beans.Option
      biouml.model.DiagramViewOptions
          biouml.standard.diagram.PathwayDiagramViewOptions

Direct Known Subclasses:

GeneNetworkDiagramType.GeneNetworkDiagramViewOptions, MetabolicPathwayDiagramType.MetabolicPathwayDiagramViewOptions, PathwaySimulationDiagramViewOptions, SemanticNetworkDiagramType.SemanticNetworkDiagramViewOptions

public class PathwayDiagramViewOptions

extends DiagramViewOptions

Nested Class Summary

static class	PathwayDiagramViewOptions.RelationTypeColor
class	PathwayDiagramViewOptions.RelationTypeStroke

Field Summary

Brush	ActiveProteinBrush
boolean	automaticallyLocateReactions
protected static java.lang.String	BRUSH
Pen	CatalystActionPen
Brush	CellCytoplasmBrush
Brush	CellNucleusBrush
protected ColorFont	conceptTitleFont
Brush	DecreaseActionBrush
protected static java.lang.String	DEFAULT
protected ColorFont	functionTitleFont
Brush	GeneBrush
Brush	InactiveProteinBrush
Brush	IncreaseActionBrush
Pen	InhibitorActionPen
Brush	ModefiedProteinBrush
protected static java.lang.String	PEN
Pen	processPen
protected ColorFont	processTitleFont
Brush	ProteinBrush
Brush	ReactionBrush
Pen	ReactionPen
protected ColorFont	relationTitleFont
protected PathwayDiagramViewOptions.RelationTypeColor[]	relationTypeColors
protected PathwayDiagramViewOptions.RelationTypeStroke[]	relationTypeStrokes
protected java.util.HashMap	semanticRelationOptions
boolean	showReactionName
Pen	statePen
protected ColorFont	stateTitleFont
Brush	SubstanceBrush
Brush	SwitchOffActionBrush
Pen	SwitchOffActionPen
Brush	SwitchOnActionBrush
Pen	SwitchOnActionPen
protected java.awt.Point	titleMargin Margin between title and surrounding it raound rectangle.

Fields inherited from class biouml.model.DiagramViewOptions

compartmentTitleAlignment, compartmentTitleFont, defaultFont, defaultPen, designMode, diagramTitleAlignment, diagramTitleFont, diagramTitleVisible, nodePen, nodeTitleFont, nodeTitleMargin, noteBrush, noteLinkPen, noteMargin

Fields inherited from class com.beanexplorer.beans.Option

notificationEnabled, propagationEnabled

Constructor Summary

PathwayDiagramViewOptions(com.beanexplorer.beans.Option parent)
Creates PathwayDiagramViewOptions and initializes it.

Method Summary

PathwayDiagramViewOptions.RelationTypeColor[]	getRelationTypeColors()
PathwayDiagramViewOptions.RelationTypeStroke[]	getRelationTypeStrokes()
Brush	getSemanticRelationBrush(java.lang.String relationType)
Pen	getSemanticRelationPen(java.lang.String relationType, java.lang.String participationType)
java.awt.Point	getTitleMargin()
void	initSemanticRelationOptions()
void	setRelationTypeColors(PathwayDiagramViewOptions.RelationTypeColor[] relationTypeColors)
void	setRelationTypeStrokes(PathwayDiagramViewOptions.RelationTypeStroke[] relationTypeStrokes)
void	setTitleMargin(java.awt.Point titleMargin)

Methods inherited from class biouml.model.DiagramViewOptions

getCompartmentTitleAlignment, getCompartmentTitleFont, getDefaultFont, getDefaultPen, getDiagramTitleAlignment, getDiagramTitleFont, getNodePen, getNodeTitleFont, getNodeTitleMargin, getNoteBrush, getNoteLinkPen, getNoteMargin, isDesignMode, isDiagramTitleVisible, setCompartmentTitleAlignment, setCompartmentTitleFont, setDefaultFont, setDefaultPen, setDesignMode, setDiagramTitleAlignment, setDiagramTitleFont, setDiagramTitleVisible, setNodePen, setNodeTitleFont, setNodeTitleMargin, setNoteBrush, setNoteLinkPen, setNoteMargin

Methods inherited from class com.beanexplorer.beans.Option

addPropertyChangeListener, copyListenersTo, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getParent, isNotificationEnabled, isPropagationEnabled, removePropertyChangeListener, setNotificationEnabled, setParent, setPropagationEnabled

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PEN

protected static java.lang.String PEN

BRUSH

protected static java.lang.String BRUSH

DEFAULT

protected static java.lang.String DEFAULT

CellCytoplasmBrush

public Brush CellCytoplasmBrush

CellNucleusBrush

public Brush CellNucleusBrush

GeneBrush

public Brush GeneBrush

ProteinBrush

public Brush ProteinBrush

ActiveProteinBrush

public Brush ActiveProteinBrush

InactiveProteinBrush

public Brush InactiveProteinBrush

ModefiedProteinBrush

public Brush ModefiedProteinBrush

CatalystActionPen

public Pen CatalystActionPen

InhibitorActionPen

public Pen InhibitorActionPen

SwitchOnActionPen

public Pen SwitchOnActionPen

SwitchOffActionPen

public Pen SwitchOffActionPen

ReactionPen

public Pen ReactionPen

IncreaseActionBrush

public Brush IncreaseActionBrush

DecreaseActionBrush

public Brush DecreaseActionBrush

SwitchOnActionBrush

public Brush SwitchOnActionBrush

SwitchOffActionBrush

public Brush SwitchOffActionBrush

ReactionBrush

public Brush ReactionBrush

SubstanceBrush

public Brush SubstanceBrush

automaticallyLocateReactions

public boolean automaticallyLocateReactions

showReactionName

public boolean showReactionName

conceptTitleFont

protected ColorFont conceptTitleFont

functionTitleFont

protected ColorFont functionTitleFont

processTitleFont

protected ColorFont processTitleFont

processPen

public Pen processPen

stateTitleFont

protected ColorFont stateTitleFont

statePen

public Pen statePen

relationTitleFont

protected ColorFont relationTitleFont

titleMargin

protected java.awt.Point titleMargin

Margin between title and surrounding it raound rectangle.

relationTypeColors

protected PathwayDiagramViewOptions.RelationTypeColor[] relationTypeColors

relationTypeStrokes

protected PathwayDiagramViewOptions.RelationTypeStroke[] relationTypeStrokes

semanticRelationOptions

protected java.util.HashMap semanticRelationOptions

Constructor Detail

PathwayDiagramViewOptions

public PathwayDiagramViewOptions(com.beanexplorer.beans.Option parent)

Creates PathwayDiagramViewOptions and initializes it.

Parameters:

parent - parent property

Method Detail

getTitleMargin

public java.awt.Point getTitleMargin()

setTitleMargin

public void setTitleMargin(java.awt.Point titleMargin)

getRelationTypeColors

public PathwayDiagramViewOptions.RelationTypeColor[] getRelationTypeColors()

setRelationTypeColors

public void setRelationTypeColors(PathwayDiagramViewOptions.RelationTypeColor[] relationTypeColors)

getRelationTypeStrokes

public PathwayDiagramViewOptions.RelationTypeStroke[] getRelationTypeStrokes()

setRelationTypeStrokes

public void setRelationTypeStrokes(PathwayDiagramViewOptions.RelationTypeStroke[] relationTypeStrokes)

initSemanticRelationOptions

public void initSemanticRelationOptions()

getSemanticRelationPen

public Pen getSemanticRelationPen(java.lang.String relationType,
                                  java.lang.String participationType)

getSemanticRelationBrush

public Brush getSemanticRelationBrush(java.lang.String relationType)