biouml.plugins.sbml
Class SbmlConstants

java.lang.Object
  biouml.plugins.sbml.SbmlConstants

Direct Known Subclasses:

SbmlSupport

public class SbmlConstants

extends java.lang.Object

Field Summary

static java.lang.String	ANNOTATION_ELEMENT
static java.lang.String	ASSIGNEMENT_ELEMENT
static java.lang.String	ASSIGNEMENT_LIST_ELEMENT
static java.lang.String	ASSIGNEMENT_VARIABLE_ATTR
static java.lang.String	BIOUML_COMPARTMENT_INFO_ELEMENT
static java.lang.String	BIOUML_EDGE_INFO_ELEMENT
static java.lang.String	BIOUML_NODE_INFO_ELEMENT
static java.lang.String	BIOUML_SPECIE_INFO_ELEMENT
static java.lang.String	BIOUML_SPECIE_TYPE_ATTR
static java.lang.String	BIOUML_XMLNS_ATTR
static java.lang.String	BIOUML_XMLNS_VALUE
static java.lang.String	COMPARTMENT_ATTR
static java.lang.String	COMPARTMENT_DIMENTION_ATTR
static java.lang.String	COMPARTMENT_ELEMENT
static java.lang.String	COMPARTMENT_LIST_ELEMENT
static java.lang.String	COMPARTMENT_OUTSIDE_ATTR
static java.lang.String	COMPARTMENT_VOLUME_ATTR
static java.lang.String	CONSTANT_ATTR
static java.lang.String	DELAY_ELEMENT
static java.lang.String	DENOMINATOR_ATTR
static java.lang.String	EVENT_ELEMENT
static java.lang.String	EVENT_LIST_ELEMENT
static java.lang.String	FORMULA_ATTR
static java.lang.String	FUNCTION_DEFINITION_ELEMENT
static java.lang.String	FUNCTION_LIST_ELEMENT
static java.lang.String	ID_ATTR
static java.lang.String	KINETIC_LAW_ELEMENT
static java.lang.String	MATH_ATTR
static java.lang.String	MATH_ELEMENT
static java.lang.String	MODEL_ELEMENT
static java.lang.String	MODIFIER_LIST_ELEMENT
static java.lang.String	NAME_ATTR
static java.lang.String	NOTES_ELEMENT
static java.lang.String	PARAMETER_ELEMENT
static java.lang.String	PARAMETER_LIST_ELEMENT
static java.lang.String	PARAMETER_VALUE_ATTR
static java.lang.String	PRODUCT_LIST_ELEMENT
static java.lang.String	PRODUCT_STUB
static java.lang.String	REACTANT_LIST_ELEMENT
static java.lang.String	REACTANT_STUB
static java.lang.String	REACTION_ELEMENT
static java.lang.String	REACTION_FAST_ATTR
static java.lang.String	REACTION_LIST_ELEMENT
static java.lang.String	REACTION_REVERSIBLE_ATTR
static java.lang.String	RULE_ALGEBRAIC_ELEMENT
static java.lang.String	RULE_ASSIGNEMENT_ELEMENT
static java.lang.String	RULE_COMMENT_ATTR
static java.lang.String	RULE_COMPARTMENT_VOLUME_ELEMENT
static java.lang.String	RULE_FORMULA_ATTR
static java.lang.String	RULE_LIST_ELEMENT
static java.lang.String	RULE_PARAMETER_ELEMENT
static java.lang.String	RULE_RATE_ELEMENT
static java.lang.String	RULE_SPECIE_CONCENTRATION_ELEMENT
static java.lang.String	RULE_VARIABLE_ATTR
static java.lang.String	SBML_ELEMENT
static java.lang.String	SBML_LEVEL_ATTR
static java.lang.String	SBML_LEVEL_VALUE_1
static java.lang.String	SBML_LEVEL_VALUE_2
static java.lang.String	SBML_VERSION_ATTR
static java.lang.String	SBML_VERSION_VALUE_1
static java.lang.String	SBML_VERSION_VALUE_2
static java.lang.String	SBML_XMLNS_VALUE
static java.lang.String	SPECIE_ATTR
static java.lang.String	SPECIE_ATTR_11
static java.lang.String	SPECIE_BOUNDARY_CONDITION_ATTR
static java.lang.String	SPECIE_CHARGE_ATTR
static java.lang.String	SPECIE_DEFAULT_SUBSTANCE_UNITS
static java.lang.String	SPECIE_ELEMENT
static java.lang.String	SPECIE_ELEMENT_11
static java.lang.String	SPECIE_HAS_ONLY_SUBSTANCE_UNITS_ATTR
static java.lang.String	SPECIE_INITIAL_AMOUNT_ATTR
static java.lang.String	SPECIE_INITIAL_CONCENTRATION_ATTR
static java.lang.String	SPECIE_LIST_ELEMENT
static java.lang.String	SPECIE_REFERENCE_ELEMENT
static java.lang.String	SPECIE_REFERENCE_ELEMENT_11
static java.lang.String	SPECIE_SPATIAL_SIZE_UNITS_ATTR
static java.lang.String	SPECIE_SUBSTANCE_UNITS_ATTR
static java.lang.String	STOICHIOMETRY_ATTR
static java.lang.String	STOICHIOMETRY_MATH_ELEMENT
static java.lang.String	SUBSTANCE_UNITS_ATTR
static java.lang.String	TIME_UNITS_ATTR
static java.lang.String	TRIGGER_ELEMENT
static java.lang.String	TYPE_ATTR
static java.lang.String	UNIT_LIST_ELEMENT
static java.lang.String	UNIT_SUBSTANCE
static java.lang.String	UNIT_TIME
static java.lang.String	UNIT_VOLUME
static java.lang.String	UNITS_ATTR
static java.lang.String	XMLNS_ATTR

Constructor Summary

SbmlConstants()

Method Summary

static java.lang.String

DEFAULT_SPATIAL_SIZE_UNITS(int dimention)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SBML_ELEMENT

public static final java.lang.String SBML_ELEMENT

See Also:

Constant Field Values

SBML_LEVEL_ATTR

public static final java.lang.String SBML_LEVEL_ATTR

See Also:

Constant Field Values

SBML_LEVEL_VALUE_1

public static final java.lang.String SBML_LEVEL_VALUE_1

See Also:

Constant Field Values

SBML_LEVEL_VALUE_2

public static final java.lang.String SBML_LEVEL_VALUE_2

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Constant Field Values

SBML_VERSION_ATTR

public static final java.lang.String SBML_VERSION_ATTR

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Constant Field Values

SBML_VERSION_VALUE_1

public static final java.lang.String SBML_VERSION_VALUE_1

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Constant Field Values

SBML_VERSION_VALUE_2

public static final java.lang.String SBML_VERSION_VALUE_2

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Constant Field Values

XMLNS_ATTR

public static final java.lang.String XMLNS_ATTR

See Also:

Constant Field Values

SBML_XMLNS_VALUE

public static final java.lang.String SBML_XMLNS_VALUE

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Constant Field Values

ID_ATTR

public static final java.lang.String ID_ATTR

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Constant Field Values

NAME_ATTR

public static final java.lang.String NAME_ATTR

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Constant Field Values

UNITS_ATTR

public static final java.lang.String UNITS_ATTR

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Constant Field Values

NOTES_ELEMENT

public static final java.lang.String NOTES_ELEMENT

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Constant Field Values

ANNOTATION_ELEMENT

public static final java.lang.String ANNOTATION_ELEMENT

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Constant Field Values

TYPE_ATTR

public static final java.lang.String TYPE_ATTR

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Constant Field Values

CONSTANT_ATTR

public static final java.lang.String CONSTANT_ATTR

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Constant Field Values

MODEL_ELEMENT

public static final java.lang.String MODEL_ELEMENT

See Also:

Constant Field Values

FUNCTION_LIST_ELEMENT

public static final java.lang.String FUNCTION_LIST_ELEMENT

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Constant Field Values

FUNCTION_DEFINITION_ELEMENT

public static final java.lang.String FUNCTION_DEFINITION_ELEMENT

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Constant Field Values

UNIT_LIST_ELEMENT

public static final java.lang.String UNIT_LIST_ELEMENT

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Constant Field Values

UNIT_SUBSTANCE

public static final java.lang.String UNIT_SUBSTANCE

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Constant Field Values

UNIT_TIME

public static final java.lang.String UNIT_TIME

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Constant Field Values

UNIT_VOLUME

public static final java.lang.String UNIT_VOLUME

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Constant Field Values

COMPARTMENT_LIST_ELEMENT

public static final java.lang.String COMPARTMENT_LIST_ELEMENT

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Constant Field Values

COMPARTMENT_ELEMENT

public static final java.lang.String COMPARTMENT_ELEMENT

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Constant Field Values

COMPARTMENT_VOLUME_ATTR

public static final java.lang.String COMPARTMENT_VOLUME_ATTR

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Constant Field Values

COMPARTMENT_OUTSIDE_ATTR

public static final java.lang.String COMPARTMENT_OUTSIDE_ATTR

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Constant Field Values

COMPARTMENT_DIMENTION_ATTR

public static final java.lang.String COMPARTMENT_DIMENTION_ATTR

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Constant Field Values

SPECIE_LIST_ELEMENT

public static final java.lang.String SPECIE_LIST_ELEMENT

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Constant Field Values

SPECIE_ELEMENT_11

public static final java.lang.String SPECIE_ELEMENT_11

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Constant Field Values

SPECIE_ELEMENT

public static final java.lang.String SPECIE_ELEMENT

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Constant Field Values

COMPARTMENT_ATTR

public static final java.lang.String COMPARTMENT_ATTR

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Constant Field Values

SPECIE_INITIAL_AMOUNT_ATTR

public static final java.lang.String SPECIE_INITIAL_AMOUNT_ATTR

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Constant Field Values

SPECIE_SUBSTANCE_UNITS_ATTR

public static final java.lang.String SPECIE_SUBSTANCE_UNITS_ATTR

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Constant Field Values

SPECIE_CHARGE_ATTR

public static final java.lang.String SPECIE_CHARGE_ATTR

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Constant Field Values

SPECIE_DEFAULT_SUBSTANCE_UNITS

public static final java.lang.String SPECIE_DEFAULT_SUBSTANCE_UNITS

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Constant Field Values

SPECIE_BOUNDARY_CONDITION_ATTR

public static final java.lang.String SPECIE_BOUNDARY_CONDITION_ATTR

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Constant Field Values

SPECIE_INITIAL_CONCENTRATION_ATTR

public static final java.lang.String SPECIE_INITIAL_CONCENTRATION_ATTR

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Constant Field Values

SPECIE_SPATIAL_SIZE_UNITS_ATTR

public static final java.lang.String SPECIE_SPATIAL_SIZE_UNITS_ATTR

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Constant Field Values

SPECIE_HAS_ONLY_SUBSTANCE_UNITS_ATTR

public static final java.lang.String SPECIE_HAS_ONLY_SUBSTANCE_UNITS_ATTR

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Constant Field Values

PARAMETER_LIST_ELEMENT

public static final java.lang.String PARAMETER_LIST_ELEMENT

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Constant Field Values

PARAMETER_ELEMENT

public static final java.lang.String PARAMETER_ELEMENT

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Constant Field Values

PARAMETER_VALUE_ATTR

public static final java.lang.String PARAMETER_VALUE_ATTR

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Constant Field Values

RULE_LIST_ELEMENT

public static final java.lang.String RULE_LIST_ELEMENT

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Constant Field Values

RULE_RATE_ELEMENT

public static final java.lang.String RULE_RATE_ELEMENT

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Constant Field Values

RULE_ALGEBRAIC_ELEMENT

public static final java.lang.String RULE_ALGEBRAIC_ELEMENT

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Constant Field Values

RULE_ASSIGNEMENT_ELEMENT

public static final java.lang.String RULE_ASSIGNEMENT_ELEMENT

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Constant Field Values

RULE_VARIABLE_ATTR

public static final java.lang.String RULE_VARIABLE_ATTR

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Constant Field Values

RULE_FORMULA_ATTR

public static final java.lang.String RULE_FORMULA_ATTR

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Constant Field Values

RULE_COMMENT_ATTR

public static final java.lang.String RULE_COMMENT_ATTR

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Constant Field Values

RULE_PARAMETER_ELEMENT

public static final java.lang.String RULE_PARAMETER_ELEMENT

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Constant Field Values

RULE_SPECIE_CONCENTRATION_ELEMENT

public static final java.lang.String RULE_SPECIE_CONCENTRATION_ELEMENT

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Constant Field Values

RULE_COMPARTMENT_VOLUME_ELEMENT

public static final java.lang.String RULE_COMPARTMENT_VOLUME_ELEMENT

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Constant Field Values

REACTION_LIST_ELEMENT

public static final java.lang.String REACTION_LIST_ELEMENT

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Constant Field Values

REACTION_ELEMENT

public static final java.lang.String REACTION_ELEMENT

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Constant Field Values

REACTION_REVERSIBLE_ATTR

public static final java.lang.String REACTION_REVERSIBLE_ATTR

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Constant Field Values

REACTION_FAST_ATTR

public static final java.lang.String REACTION_FAST_ATTR

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Constant Field Values

REACTANT_LIST_ELEMENT

public static final java.lang.String REACTANT_LIST_ELEMENT

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Constant Field Values

PRODUCT_LIST_ELEMENT

public static final java.lang.String PRODUCT_LIST_ELEMENT

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Constant Field Values

MODIFIER_LIST_ELEMENT

public static final java.lang.String MODIFIER_LIST_ELEMENT

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Constant Field Values

REACTANT_STUB

public static final java.lang.String REACTANT_STUB

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Constant Field Values

PRODUCT_STUB

public static final java.lang.String PRODUCT_STUB

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Constant Field Values

SPECIE_REFERENCE_ELEMENT_11

public static final java.lang.String SPECIE_REFERENCE_ELEMENT_11

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Constant Field Values

SPECIE_REFERENCE_ELEMENT

public static final java.lang.String SPECIE_REFERENCE_ELEMENT

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Constant Field Values

SPECIE_ATTR_11

public static final java.lang.String SPECIE_ATTR_11

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Constant Field Values

SPECIE_ATTR

public static final java.lang.String SPECIE_ATTR

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Constant Field Values

STOICHIOMETRY_ATTR

public static final java.lang.String STOICHIOMETRY_ATTR

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Constant Field Values

DENOMINATOR_ATTR

public static final java.lang.String DENOMINATOR_ATTR

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Constant Field Values

KINETIC_LAW_ELEMENT

public static final java.lang.String KINETIC_LAW_ELEMENT

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Constant Field Values

STOICHIOMETRY_MATH_ELEMENT

public static final java.lang.String STOICHIOMETRY_MATH_ELEMENT

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Constant Field Values

MATH_ELEMENT

public static final java.lang.String MATH_ELEMENT

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Constant Field Values

FORMULA_ATTR

public static final java.lang.String FORMULA_ATTR

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Constant Field Values

MATH_ATTR

public static final java.lang.String MATH_ATTR

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Constant Field Values

TIME_UNITS_ATTR

public static final java.lang.String TIME_UNITS_ATTR

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Constant Field Values

SUBSTANCE_UNITS_ATTR

public static final java.lang.String SUBSTANCE_UNITS_ATTR

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Constant Field Values

EVENT_LIST_ELEMENT

public static final java.lang.String EVENT_LIST_ELEMENT

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Constant Field Values

EVENT_ELEMENT

public static final java.lang.String EVENT_ELEMENT

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Constant Field Values

TRIGGER_ELEMENT

public static final java.lang.String TRIGGER_ELEMENT

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Constant Field Values

DELAY_ELEMENT

public static final java.lang.String DELAY_ELEMENT

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Constant Field Values

ASSIGNEMENT_LIST_ELEMENT

public static final java.lang.String ASSIGNEMENT_LIST_ELEMENT

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Constant Field Values

ASSIGNEMENT_ELEMENT

public static final java.lang.String ASSIGNEMENT_ELEMENT

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Constant Field Values

ASSIGNEMENT_VARIABLE_ATTR

public static final java.lang.String ASSIGNEMENT_VARIABLE_ATTR

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Constant Field Values

BIOUML_XMLNS_ATTR

public static final java.lang.String BIOUML_XMLNS_ATTR

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Constant Field Values

BIOUML_XMLNS_VALUE

public static final java.lang.String BIOUML_XMLNS_VALUE

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Constant Field Values

BIOUML_COMPARTMENT_INFO_ELEMENT

public static final java.lang.String BIOUML_COMPARTMENT_INFO_ELEMENT

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Constant Field Values

BIOUML_NODE_INFO_ELEMENT

public static final java.lang.String BIOUML_NODE_INFO_ELEMENT

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Constant Field Values

BIOUML_EDGE_INFO_ELEMENT

public static final java.lang.String BIOUML_EDGE_INFO_ELEMENT

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Constant Field Values

BIOUML_SPECIE_INFO_ELEMENT

public static final java.lang.String BIOUML_SPECIE_INFO_ELEMENT

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Constant Field Values

BIOUML_SPECIE_TYPE_ATTR

public static final java.lang.String BIOUML_SPECIE_TYPE_ATTR

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Constant Field Values

Constructor Detail

SbmlConstants

public SbmlConstants()

Method Detail

DEFAULT_SPATIAL_SIZE_UNITS

public static final java.lang.String DEFAULT_SPATIAL_SIZE_UNITS(int dimention)