biouml.plugins.cellml
Class CellMLSupport

java.lang.Object
  biouml.plugins.cellml.CellMLSupport

All Implemented Interfaces:

CellMLConstants

Direct Known Subclasses:

CellMLModelReader, CellMLModelWriter

public class CellMLSupport

extends java.lang.Object

implements CellMLConstants

Field Summary

protected Diagram	diagram
protected java.io.File	file
protected org.apache.log4j.Category	log
protected java.lang.String	modelName
protected Module	module
protected MessageBundle	resources

Fields inherited from interface biouml.plugins.cellml.CellMLConstants

BIOUML_COMPARTMENT_INFO_ELEMENT, BIOUML_EDGE_INFO_ELEMENT, BIOUML_NODE_INFO_ELEMENT, BIOUML_SPECIES_INFO_ELEMENT, BIOUML_SPECIES_TYPE_ATTR, BIOUML_XMLNS_ATTR, BIOUML_XMLNS_VALUE, COMPONENT_1_ATTR, COMPONENT_2_ATTR, COMPONENT_ELEMENT, CONNECTION_ELEMENT, DIRECTION_ATTR, ENVIRONMENT, INITIAL_VALUE_ATTR, MAP_COMPONENTS_ELEMENT, MATH_ELEMENT, MODEL_ELEMENT, NAME_ATTR, PUBLIC_INTERFACE_ATTR, PUBLIC_INTERFACE_NONE, RDF_ELEMENT, REACTION_ELEMENT, REACTION_REVERSIBLE_ATTR, ROLE_ACTIVATOR, ROLE_ATTR, ROLE_CATALYST, ROLE_ELEMENT, ROLE_INHIBITOR, ROLE_MODIFIER, ROLE_PRODUCT, ROLE_RATE, ROLE_REACTANT, STOICHIOMETRY_ATTR, UNITS_ATTR, VARIABLE_ATTR, VARIABLE_ELEMENT, VARIABLE_REF_ELEMENT

Constructor Summary

CellMLSupport(java.io.File inFile)

Method Summary

protected void	error(java.lang.String messageBundleKey, java.lang.String[] params)
org.w3c.dom.Element	getElement(org.w3c.dom.Element element, java.lang.String childName)
protected void	warn(java.lang.String messageBundleKey, java.lang.String[] params)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected org.apache.log4j.Category log

file

protected java.io.File file

module

protected Module module

diagram

protected Diagram diagram

modelName

protected java.lang.String modelName

resources

protected MessageBundle resources

Constructor Detail

CellMLSupport

public CellMLSupport(java.io.File inFile)
              throws java.lang.Exception

Method Detail

error

protected void error(java.lang.String messageBundleKey,
                     java.lang.String[] params)

warn

protected void warn(java.lang.String messageBundleKey,
                    java.lang.String[] params)

getElement

public org.w3c.dom.Element getElement(org.w3c.dom.Element element,
                                      java.lang.String childName)