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| Classes in biouml.model used by biouml.model | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
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| Diagram
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| DiagramElement
Common definition of diagram element. |
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| DiagramElementBeanInfo
Utility class containing common metada for all diagram elements. |
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| DiagramFilter
Filter cab be applied to any diagram view. |
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| DiagramType
Formalyze the diagram attributes. |
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| DiagramTypeConverter
General interface to convert diagram type. |
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| DiagramTypeConverter.YesConverter
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| DiagramViewBuilder
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| DiagramViewOptions
General class to store options for diagram painting. |
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| Edge
Edge is directed relation between two diagram nodes, called "input" and "output". |
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| EquivalentNodeGroup
Group of equivalent nodes. |
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| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
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| ModuleType
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| Node
Diagram node element |
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| NodeBeanInfo
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| NodeInfo
Utility class for QueryEngine. |
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| QueryEngine
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| QueryOptions
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| Role
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| SemanticController
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| Classes in biouml.model used by biouml.model.dynamics | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
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| DefaultDiagramViewBuilder
Default implementation of DiagramViewBuilder. |
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| Diagram
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| DiagramElement
Common definition of diagram element. |
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| DiagramType
Formalyze the diagram attributes. |
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| DiagramTypeSupport
Stub implementation of DiagramType interface. |
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| DiagramViewBuilder
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| DiagramViewOptions
General class to store options for diagram painting. |
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| Edge
Edge is directed relation between two diagram nodes, called "input" and "output". |
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| Node
Diagram node element |
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| Role
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| SemanticController
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| Classes in biouml.model used by biouml.model.htmlgen | |
| Diagram
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| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
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| Classes in biouml.model used by biouml.model.util | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
|
| Diagram
|
|
| DiagramElement
Common definition of diagram element. |
|
| Edge
Edge is directed relation between two diagram nodes, called "input" and "output". |
|
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
|
| Node
Diagram node element |
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| Classes in biouml.model used by biouml.plugins.cellml | |
| DefaultDiagramViewBuilder
Default implementation of DiagramViewBuilder. |
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| DefaultSemanticController
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| Diagram
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| DiagramImporter
General interface to import digaram, for example from SBML or CellML file. |
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| DiagramType
Formalyze the diagram attributes. |
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| DiagramTypeSupport
Stub implementation of DiagramType interface. |
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| DiagramViewBuilder
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|
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
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| ModuleType
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| Node
Diagram node element |
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| QueryEngine
|
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| SemanticController
|
|
| Classes in biouml.model used by biouml.plugins.ginsim | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
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| DefaultDiagramViewBuilder
Default implementation of DiagramViewBuilder. |
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| Diagram
|
|
| DiagramExporter
General interface to export digaram in the specified format, for example in SBML format or as PNG image. |
|
| DiagramImporter
General interface to import digaram, for example from SBML or CellML file. |
|
| DiagramType
Formalyze the diagram attributes. |
|
| DiagramTypeSupport
Stub implementation of DiagramType interface. |
|
| DiagramViewBuilder
|
|
| DiagramViewOptions
General class to store options for diagram painting. |
|
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
|
| Node
Diagram node element |
|
| Classes in biouml.model used by biouml.plugins.gxl | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
|
| Diagram
|
|
| DiagramExporter
General interface to export digaram in the specified format, for example in SBML format or as PNG image. |
|
| DiagramType
Formalyze the diagram attributes. |
|
| Edge
Edge is directed relation between two diagram nodes, called "input" and "output". |
|
| Node
Diagram node element |
|
| Classes in biouml.model used by biouml.plugins.jgraph | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
|
| Diagram
|
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| Classes in biouml.model used by biouml.plugins.matlab | |
| DiagramElement
Common definition of diagram element. |
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| Role
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| Classes in biouml.model used by biouml.plugins.sbml | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
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| DefaultDiagramViewBuilder
Default implementation of DiagramViewBuilder. |
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| DefaultSemanticController
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| Diagram
|
|
| DiagramElement
Common definition of diagram element. |
|
| DiagramExporter
General interface to export digaram in the specified format, for example in SBML format or as PNG image. |
|
| DiagramImporter
General interface to import digaram, for example from SBML or CellML file. |
|
| DiagramType
Formalyze the diagram attributes. |
|
| DiagramTypeSupport
Stub implementation of DiagramType interface. |
|
| DiagramViewBuilder
|
|
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
|
| ModuleType
|
|
| Node
Diagram node element |
|
| QueryEngine
|
|
| Role
|
|
| SemanticController
|
|
| Classes in biouml.model used by biouml.plugins.simulation | |
| Diagram
|
|
| DiagramElement
Common definition of diagram element. |
|
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
|
| Role
|
|
| Classes in biouml.model used by biouml.plugins.simulation.java | |
| DiagramElement
Common definition of diagram element. |
|
| Role
|
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| Classes in biouml.model used by biouml.plugins.simulation.plot | |
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
|
| Classes in biouml.model used by biouml.plugins.svg | |
| Diagram
|
|
| DiagramExporter
General interface to export digaram in the specified format, for example in SBML format or as PNG image. |
|
| Classes in biouml.model used by biouml.standard | |
| Diagram
|
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| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
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| ModuleType
|
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| NodeInfo
Utility class for QueryEngine. |
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| QueryEngine
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| QueryEngineSupport
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| QueryOptions
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| QueryOptionsBeanInfo
Created by IntelliJ IDEA. |
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| Classes in biouml.model used by biouml.standard.diagram | |
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
|
| DefaultDiagramViewBuilder
Default implementation of DiagramViewBuilder. |
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| DefaultSemanticController
|
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| Diagram
|
|
| DiagramElement
Common definition of diagram element. |
|
| DiagramFilter
Filter cab be applied to any diagram view. |
|
| DiagramType
Formalyze the diagram attributes. |
|
| DiagramTypeSupport
Stub implementation of DiagramType interface. |
|
| DiagramViewBuilder
|
|
| DiagramViewOptions
General class to store options for diagram painting. |
|
| Edge
Edge is directed relation between two diagram nodes, called "input" and "output". |
|
| EquivalentNodeGroup
Group of equivalent nodes. |
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| Node
Diagram node element |
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| Role
|
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| SemanticController
|
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| Classes in biouml.model used by biouml.standard.filter | |
| AbstractFilter
Utility class that provides support for basic diagram filter operations. |
|
| Compartment
General definition of the compartment as a container for nodes and edges between them. |
|
| Diagram
|
|
| DiagramElement
Common definition of diagram element. |
|
| DiagramFilter
Filter cab be applied to any diagram view. |
|
| EquivalentNodeGroup
Group of equivalent nodes. |
|
| Node
Diagram node element |
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| Classes in biouml.model used by biouml.workbench | |
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
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| Classes in biouml.model used by biouml.workbench.diagram | |
| Diagram
|
|
| DiagramElement
Common definition of diagram element. |
|
| DiagramExporter
General interface to export digaram in the specified format, for example in SBML format or as PNG image. |
|
| DiagramImporter
General interface to import digaram, for example from SBML or CellML file. |
|
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
|
|
| SemanticController
|
|
| Classes in biouml.model used by biouml.workbench.module | |
| Module
The module data is hierarchically organised in following manner: Diagrams DataCollection of Diagrams.
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