Overview | Package | Class | Use | Tree | Deprecated | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
biouml.model.Diagram

Packages that use Diagram
biouml.model |
biouml.model.dynamics |
biouml.model.htmlgen |
biouml.model.util |
biouml.plugins.cellml |
biouml.plugins.ginsim |
biouml.plugins.gxl |
biouml.plugins.jgraph |
biouml.plugins.sbml |
biouml.plugins.simulation |
biouml.plugins.svg |
biouml.standard |
biouml.standard.diagram |
biouml.standard.filter |
biouml.workbench.diagram |

Uses of Diagram in biouml.model

Methods in biouml.model that return Diagram
`Diagram` | `Module.getDiagram(java.lang.String name)`
`static Diagram` | `Diagram.createDiagram(DiagramType type, java.lang.String diagramName, DataCollection origin)`

Methods in biouml.model with parameters of type Diagram
`NodeInfo[]` | `QueryEngineSupport.searchLinked(Diagram diagram, Node node, QueryOptions options)`
`protected java.util.Set` | `QueryEngineSupport.searchLinked(Diagram diagram, java.util.Set lastNodes, java.util.Set linkedNodes, QueryOptions options)`
`NodeInfo[]` | `QueryEngineSupport.addLinked(Diagram diagram, Node start, NodeInfo[] linked)` Appends linked nodes to the diagram.
`abstract NodeInfo[]` | `QueryEngineSupport.getLinked(Diagram diagram, NodeInfo node, QueryOptions opt)`
`NodeInfo[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, QueryOptions options)`
`NodeInfo[]` | `QueryEngine.addLinked(Diagram diagram, Node start, NodeInfo[] nodeInfoArr)`
`void` | `Node.setRelativeLocation(Diagram diagram, java.awt.Point location)`
`void` | `Module.putDiagram(Diagram diagram)`
`CompositeView` | `DiagramViewBuilder.createDiagramView(Diagram diagram, java.awt.Graphics g)`
`DiagramFilter` | `DiagramTypeSupport.getDiagramFilter(Diagram diagram)`
`void` | `DiagramTypeConverter.convert(Diagram diagram, java.lang.Class type)`
`void` | `DiagramTypeConverter.YesConverter.convert(Diagram diagram, java.lang.Class type)`
`void` | `DiagramTypeConverter.NoConverter.convert(Diagram diagram, java.lang.Class type)`
`void` | `DiagramTypeConverter.ConditionalConverter.convert(Diagram diagram, java.lang.Class type)`
`protected void` | `DiagramTypeConverter.ConditionalConverter.message(java.lang.StringBuffer buf, DiagramElement de, Diagram diagram)`
`DiagramFilter` | `DiagramType.getDiagramFilter(Diagram diagram)`
`boolean` | `DiagramExporter.accept(Diagram diagram)` Returns true if the specified diagram can be exported in this format and false otherwise.
`void` | `DiagramExporter.doExport(Diagram diagram, java.io.File file)` Exports the specified diagram into the specified file or directory.
`protected void` | `Diagram.doClone(Diagram diagram)`
`CompositeView` | `DefaultDiagramViewBuilder.createDiagramView(Diagram diagram, java.awt.Graphics g)` Creates the diagram view

Uses of Diagram in biouml.model.dynamics

Methods in biouml.model.dynamics with parameters of type Diagram
`protected java.util.Properties` | `VariablesDataCollection.createCollectionProperties(Diagram diagram)`
`protected static java.util.Properties` | `VariablesDataCollection.createProperties(Diagram diagram)` Creates some properties required by `DerivedDataCollection`.

Constructors in biouml.model.dynamics with parameters of type Diagram
`VariablesDataCollection(DataCollection parent, Diagram diagram)`

Uses of Diagram in biouml.model.htmlgen

Fields in biouml.model.htmlgen declared as Diagram
`protected Diagram` | `GenerateHTMLDialog.diagram`

Methods in biouml.model.htmlgen with parameters of type Diagram
`static void` | `GenerateHTMLDialog.genHTML(Diagram diagram, java.io.File outputFolder, java.io.File templateFile, org.apache.log4j.Category cat)`

Constructors in biouml.model.htmlgen with parameters of type Diagram
`GenerateHTMLDialog(javax.swing.JDialog dialog, java.lang.String title, Module module, Diagram diagram)`
`GenerateHTMLDialog(javax.swing.JFrame frame, java.lang.String title, Module module, Diagram diagram)`

Uses of Diagram in biouml.model.util

Fields in biouml.model.util declared as Diagram
`protected Diagram` | `DiagramXmlSupport.diagram`

Methods in biouml.model.util that return Diagram
`Diagram` | `DiagramXmlReader.read()`
`Diagram` | `DiagramXmlReader.read(DataCollection origin, Module module)`

Methods in biouml.model.util with parameters of type Diagram
`static java.awt.image.BufferedImage` | `ImageGenerator.generateDiagramImage(Diagram diagram)`
`static java.awt.image.BufferedImage` | `ImageGenerator.generateDiagramImage(Diagram diagram, java.awt.Graphics graphics)`
`void` | `DiagramXmlWriter.write(Diagram sourceDiagram, Module module)`
`void` | `DiagramXmlWriter.write(Diagram sourceDiagram, Module module, javax.xml.transform.Transformer transformer)`
`protected org.w3c.dom.Element` | `DiagramXmlWriter.createDiagramInfo(Diagram diagram)`
`protected void` | `DiagramXmlWriter.createEventList(org.w3c.dom.Element element, Diagram diagram)`
`protected void` | `DiagramXmlWriter.createStateList(org.w3c.dom.Element element, Diagram diagram)`
`protected org.w3c.dom.Element` | `DiagramXmlWriter.createState(State state, Diagram diagram)`
`protected void` | `DiagramXmlWriter.createTransitionList(org.w3c.dom.Element element, Diagram diagram)`
`protected org.w3c.dom.Element` | `DiagramXmlWriter.createTransition(Transition transition, Diagram diagram)`
`protected org.w3c.dom.Element` | `DiagramXmlWriter.createEvent(Event event, Diagram diagram)`
`protected org.w3c.dom.Element` | `DiagramXmlWriter.createAssignment(Assignment action, Diagram diagram)`
`protected void` | `DiagramXmlReader.readVariables(org.w3c.dom.Element modelElement, Diagram diagram)`

Uses of Diagram in biouml.plugins.cellml

Fields in biouml.plugins.cellml declared as Diagram
`protected Diagram` | `CellMLSupport.diagram`

Methods in biouml.plugins.cellml that return Diagram
`Diagram` | `CellMLModelReader.read(DataCollection origin, Module module)`
`protected Diagram` | `CellMLModelReader.readDiagram(org.w3c.dom.Element element, DataCollection origin)`

Methods in biouml.plugins.cellml with parameters of type Diagram
`void` | `CellMLModelWriter.write(Diagram sourceDiagram)`
`void` | `CellMLModelWriter.write(Diagram sourceDiagram, javax.xml.transform.Transformer transformer)`

Uses of Diagram in biouml.plugins.ginsim

Fields in biouml.plugins.ginsim declared as Diagram
`protected Diagram` | `GinSimReader.diagram`

Methods in biouml.plugins.ginsim with parameters of type Diagram
`boolean` | `GinMLExporter.accept(Diagram diagram)`
`void` | `GinMLExporter.doExport(Diagram diagram, java.io.File file)`

Uses of Diagram in biouml.plugins.gxl

Fields in biouml.plugins.gxl declared as Diagram
`protected Diagram` | `GxlReader.diagram`

Methods in biouml.plugins.gxl that return Diagram
`protected Diagram` | `GxlReader.createDiagram(java.lang.String name, DataCollection origin)`
`Diagram` | `GxlReader.readDiagram(java.io.File file, DataCollection origin)`

Methods in biouml.plugins.gxl with parameters of type Diagram
`void` | `GxlWriter.writeDiagram(java.io.File file, Diagram diagram)`
`protected void` | `GxlWriter.writeGXL(java.io.Writer out, Diagram diagram)`
`protected void` | `GxlWriter.writeGXLExtension(java.io.Writer out, Diagram diagram)`
`protected void` | `GxlWriter.writeGraph(java.io.Writer out, Diagram diagram)`
`boolean` | `GxlExporter.accept(Diagram diagram)`
`void` | `GxlExporter.doExport(Diagram diagram, java.io.File file)`

Uses of Diagram in biouml.plugins.jgraph

Methods in biouml.plugins.jgraph with parameters of type Diagram
`static void` | `DiagramToJGraphTransformer.layout(Diagram diagram, ru.biosoft.graph.Layouter layouter, java.awt.Graphics g)`

Uses of Diagram in biouml.plugins.sbml

Fields in biouml.plugins.sbml declared as Diagram
`protected Diagram` | `SbmlSupport.diagram`
`protected Diagram` | `CreateDiagramElementDialog.diagram`

Methods in biouml.plugins.sbml that return Diagram
`Diagram` | `SbmlModelReader.read(org.w3c.dom.Document document, java.lang.String name, DataCollection origin)`
`static Diagram` | `SbmlModelFactory.readDiagram(java.io.File file, DataCollection origin, java.lang.String diagramName)`

Methods in biouml.plugins.sbml with parameters of type Diagram
`static java.lang.Object` | `SbmlSemanticController.resolveName(Diagram diagram, java.lang.String sname)` Search SBML model element with the specified name.
`java.lang.String` | `SbmlSemanticController.generateReactionName(Diagram diagram)` Generates unique reaction name for the specified diagram.
`static boolean` | `SbmlModelWriter_L1.isValidModel(Diagram diagram)` Checks if the model represented by diagram is representable in SBML level 1 version 1 model.
`static boolean` | `SbmlModelWriter_21.isValidModel(Diagram diagram)` Checks if the model represented by diagram is representable in SBML level 1 version 1 model.
`org.w3c.dom.Document` | `SbmlModelWriter.createDOM(Diagram sourceDiagram)`
`static org.w3c.dom.Document` | `SbmlModelFactory.createDOM(Diagram diagram)`
`static void` | `SbmlModelFactory.writeDiagram(java.io.File file, Diagram sourceDiagram)`
`boolean` | `SbmlExporter.accept(Diagram diagram)`
`void` | `SbmlExporter.doExport(Diagram diagram, java.io.File file)`

Constructors in biouml.plugins.sbml with parameters of type Diagram
`CreateDiagramElementDialog(Diagram diagram, Compartment parent, java.lang.Class type)`

Uses of Diagram in biouml.plugins.simulation

Fields in biouml.plugins.simulation declared as Diagram
`protected Diagram` | `SimulationEngine.diagram`

Methods in biouml.plugins.simulation that return Diagram
`Diagram` | `SimulationEngine.getDiagram()`

Methods in biouml.plugins.simulation with parameters of type Diagram
`void` | `SimulationEngine.setDiagram(Diagram diagram)`

Uses of Diagram in biouml.plugins.svg

Methods in biouml.plugins.svg with parameters of type Diagram
`boolean` | `SvgDiagramExporter.accept(Diagram diagram)` Accepts any diagram.
`void` | `SvgDiagramExporter.doExport(Diagram diagram, java.io.File file)`

Uses of Diagram in biouml.standard

Methods in biouml.standard with parameters of type Diagram
`NodeInfo[]` | `StandardQueryEngine.getLinked(Diagram diagram, NodeInfo node, QueryOptions opt)`

Uses of Diagram in biouml.standard.diagram

Methods in biouml.standard.diagram that return Diagram
`protected Diagram` | `PathwaySimulationDiagramViewBuilder.getDiagram(DiagramElement de)`

Methods in biouml.standard.diagram with parameters of type Diagram
`DiagramFilter` | `SemanticNetworkDiagramType.getDiagramFilter(Diagram diagram)`
`java.lang.String` | `PathwaySemanticController.generateReactionName(Diagram diagram)` Generates unique reaction name.
`CompositeView` | `PathwayDiagramViewBuilder.createDiagramView(Diagram diagram, java.awt.Graphics g)`
`DiagramFilter` | `PathwayDiagramType.getDiagramFilter(Diagram diagram)`

Constructors in biouml.standard.diagram with parameters of type Diagram
`ReactionPane(Diagram diagram, Compartment compartment, java.awt.Point point, ViewEditorPane viewEditor)`

Uses of Diagram in biouml.standard.filter

Constructors in biouml.standard.filter with parameters of type Diagram
`BiopolimerDiagramFilter(Diagram diagram)`

Uses of Diagram in biouml.workbench.diagram

Fields in biouml.workbench.diagram declared as Diagram
`protected Diagram` | `ProcessDiagramDialog.diagram`
`protected Diagram` | `ImportDiagramDialog.diagram`
`protected Diagram` | `ExportDiagramDialog.diagram`
`protected Diagram` | `DiagramEditorHelper.diagram`

Methods in biouml.workbench.diagram that return Diagram
`Diagram` | `DiagramDocument.getDiagram()`

Methods in biouml.workbench.diagram with parameters of type Diagram
`void` | `DiagramsPane.removeDiagram(Diagram diagram)`
`boolean` | `DiagramImageWriter.accept(Diagram diagram)` Accepts any diagram.
`void` | `DiagramImageWriter.doExport(Diagram diagram, java.io.File file)`
`static DiagramExporterRegistry.ExporterInfo[]` | `DiagramExporterRegistry.getExporterInfo(java.lang.String format, Diagram diagram)` Returns suitable exporter for the specified format.

Constructors in biouml.workbench.diagram with parameters of type Diagram
`ExportDiagramDialog(Diagram diagram)`
`DiagramEditorHelper(Diagram diagram)`
`DiagramDocument(Diagram diagram)`
`ConvertDiagramDialog(Diagram diagram)`

Overview | Package | Class | Use | Tree | Deprecated | Help
PREV NEXT | FRAMES NO FRAMES

Copyright © 2001-2003 Biosof.Ru. All Rights Reserved.