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## Uses of Interface
ru.biosoft.access.DataCollection

Packages that use DataCollection
biouml.model |
biouml.model.dynamics |
biouml.model.util |
biouml.plugins.cellml |
biouml.plugins.ginsim |
biouml.plugins.gxl |
biouml.plugins.sbml |
biouml.plugins.sbw |
biouml.plugins.simulation |
biouml.plugins.simulation.access |
biouml.plugins.simulation.plot |
biouml.plugins.simulation.plot.access |
biouml.standard.type |
biouml.standard.type.access |
biouml.workbench.diagram |
ru.biosoft.access | Provides classes and interfaces for data collections.
ru.biosoft.access.repository |
ru.biosoft.access.search |
ru.biosoft.access.support |
ru.biosoft.gui.wizard |
ru.biosoft.plugins |
ru.biosoft.plugins.javascript |

Uses of DataCollection in biouml.model

Classes in biouml.model that implement DataCollection
`class` | `Compartment` General definition of the compartment as a container for nodes and edges between them.
`class` | `Diagram`
`class` | `EquivalentNodeGroup` Group of equivalent nodes.
`class` | `Module` The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.

Fields in biouml.model declared as DataCollection
`protected DataCollection` | `Compartment.collection` Primary collection.

Methods in biouml.model that return DataCollection
`static DataCollection` | `Node.findCommonOrigin(DataCollection first, DataCollection second)`
`DataCollection` | `Module.getCategory(java.lang.Class c)`
`DataCollection` | `Module.getDiagrams()`

Methods in biouml.model with parameters of type DataCollection
`static DataCollection` | `Node.findCommonOrigin(DataCollection first, DataCollection second)`
`static Diagram` | `Diagram.createDiagram(DiagramType type, java.lang.String diagramName, DataCollection origin)`
`DiagramElement` | `Diagram.clone(DataCollection origin, java.lang.String newName)`
`void` | `Compartment.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)`
`void` | `Compartment.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)`
`protected void` | `Compartment.remapEdge(DataCollection newParent, Edge edge, Node inNode, Node outNode)`

Constructors in biouml.model with parameters of type DataCollection
`Node(DataCollection parent, java.lang.String name, Base kernel)`
`Node(DataCollection parent, Base kernel)`
`Module(DataCollection primaryCollection, java.util.Properties properties)` Constructs derived data collection with primary collection.
`EquivalentNodeGroup(DataCollection parent, java.lang.String name)`
`Edge(DataCollection parent, java.lang.String id, Base kernel, Node input, Node output)`
`Edge(DataCollection parent, Base kernel, Node input, Node output)`
`DiagramElement(DataCollection parent, java.lang.String name, Base kernel)` Constructs the diagram element.
`DiagramElement(DataCollection parent, Base kernel)` Constructs the diagram element.
`Diagram(DataCollection origin, Base kernel, DiagramType type)` Creates the diagram of the specified type.
`Compartment(DataCollection parent, java.lang.String id, Base kernel)`
`Compartment(DataCollection parent, Base kernel)`

Uses of DataCollection in biouml.model.dynamics

Classes in biouml.model.dynamics that implement DataCollection
`class` | `VariablesDataCollection`

Fields in biouml.model.dynamics declared as DataCollection
`protected DataCollection` | `EModel.variables`
`protected DataCollection` | `EModel.variableRoles`
`protected DataCollection` | `EModel.parameters`

Methods in biouml.model.dynamics that return DataCollection
`DataCollection` | `EModel.getVariables()`
`DataCollection` | `EModel.getVariableRoles()`
`DataCollection` | `EModel.getParameters()`

Constructors in biouml.model.dynamics with parameters of type DataCollection
`VariablesDataCollection(DataCollection parent, Diagram diagram)`
`VariableRole(DataCollection origin, DiagramElement diagramElement, double initialValue)`
`VariableRole(java.lang.String name, DataCollection origin, double initialValue)` For internal usage.
`Variable(java.lang.String name, DataCollection origin)`
`Variable(java.lang.String name, EModel model, DataCollection origin)`

Uses of DataCollection in biouml.model.util

Methods in biouml.model.util that return DataCollection
`static DataCollection` | `Framework.getModules()`

Methods in biouml.model.util with parameters of type DataCollection
`Diagram` | `DiagramXmlReader.read(DataCollection origin, Module module)`

Uses of DataCollection in biouml.plugins.cellml

Methods in biouml.plugins.cellml with parameters of type DataCollection
`Diagram` | `CellMLModelReader.read(DataCollection origin, Module module)`
`protected Diagram` | `CellMLModelReader.readDiagram(org.w3c.dom.Element element, DataCollection origin)`

Constructors in biouml.plugins.cellml with parameters of type DataCollection
`Species(java.lang.String name, DataCollection parent)`
`Species(java.lang.String name, DataCollection parent, java.lang.String type)`
`Reaction(DataCollection origin, java.lang.String name)`

Uses of DataCollection in biouml.plugins.ginsim

Fields in biouml.plugins.ginsim declared as DataCollection
`protected DataCollection` | `GinSimReader.origin`

Uses of DataCollection in biouml.plugins.gxl

Fields in biouml.plugins.gxl declared as DataCollection
`protected DataCollection` | `GxlReader.origin`

Methods in biouml.plugins.gxl with parameters of type DataCollection
`protected Diagram` | `GxlReader.createDiagram(java.lang.String name, DataCollection origin)`
`Diagram` | `GxlReader.readDiagram(java.io.File file, DataCollection origin)`

Uses of DataCollection in biouml.plugins.sbml

Methods in biouml.plugins.sbml with parameters of type DataCollection
`Diagram` | `SbmlModelReader.read(org.w3c.dom.Document document, java.lang.String name, DataCollection origin)`
`static Diagram` | `SbmlModelFactory.readDiagram(java.io.File file, DataCollection origin, java.lang.String diagramName)`

Constructors in biouml.plugins.sbml with parameters of type DataCollection
`Specie(java.lang.String name, DataCollection parent)`
`Specie(java.lang.String name, DataCollection parent, java.lang.String type)`

Uses of DataCollection in biouml.plugins.sbw

Classes in biouml.plugins.sbw that implement DataCollection
`class` | `SbwModule`
`class` | `SbwService`
`class` | `SbwServiceCategory`
`class` | `SbwVisiblePlugin` Wrapper class to get access to SBW modules from BioUML.

Fields in biouml.plugins.sbw declared as DataCollection
`protected DataCollection` | `SbwVisiblePlugin.sbwCategories`
`protected DataCollection` | `SbwVisiblePlugin.sbwModules`

Methods in biouml.plugins.sbw that return DataCollection
`DataCollection` | `SbwServiceMethod.getOrigin()`

Constructors in biouml.plugins.sbw with parameters of type DataCollection
`SbwVisiblePlugin(DataCollection parent, java.util.Properties properties)` Constructor to be used by `CollectionFactory` to create a Plugin.
`SbwServiceCategory(DataCollection parent, java.lang.String name)`
`SbwModule(DataCollection parent, edu.caltech.sbw.ModuleDescriptor descriptor)`

Uses of DataCollection in biouml.plugins.simulation

Methods in biouml.plugins.simulation that return DataCollection
`protected DataCollection` | `SimulationEnginePane.getSimulationResultDC()`
`protected DataCollection` | `SimulationEnginePane.getSimulationResultDC(Module module)`

Constructors in biouml.plugins.simulation with parameters of type DataCollection
`SimulationResult(DataCollection origin, java.lang.String name)`

Uses of DataCollection in biouml.plugins.simulation.access

Methods in biouml.plugins.simulation.access with parameters of type DataCollection
`void` | `SimulationResultTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)`

Uses of DataCollection in biouml.plugins.simulation.plot

Fields in biouml.plugins.simulation.plot declared as DataCollection
`protected DataCollection` | `PlotPane.resultCollection`
`protected DataCollection` | `PlotEx.simulationResults`
`protected DataCollection` | `PlotEx.plots`

Methods in biouml.plugins.simulation.plot that return DataCollection
`DataCollection` | `PlotPane.getResultCollection()`
`DataCollection` | `PlotEx.getSimulationResultCollection()`
`protected DataCollection` | `PlotEx.doGetSimulationResultCollection()`
`DataCollection` | `PlotEx.getPlotCollection()`
`protected DataCollection` | `PlotEx.doGetPlotCollection()`

Methods in biouml.plugins.simulation.plot with parameters of type DataCollection
`void` | `PlotPane.setResultCollection(DataCollection resultCollection)`
`static Plot` | `Plot.createDefaultPlot(DataCollection plotCollection)`

Constructors in biouml.plugins.simulation.plot with parameters of type DataCollection
`Plot(java.lang.String name, DataCollection origin, java.util.List series)`
`Plot(java.lang.String name, DataCollection origin)`

Uses of DataCollection in biouml.plugins.simulation.plot.access

Methods in biouml.plugins.simulation.plot.access with parameters of type DataCollection
`void` | `PlotTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)`

Uses of DataCollection in biouml.standard.type

Classes in biouml.standard.type that implement DataCollection
`class` | `Reaction`

Methods in biouml.standard.type that return DataCollection
`DataCollection` | `ReferrerBeanInfo.LiteratureReferencesEditor.getDataCollection()`

Methods in biouml.standard.type with parameters of type DataCollection
`SpecieReference` | `SpecieReference.clone(DataCollection origin, java.lang.String name)`
`void` | `Reaction.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)`
`void` | `Reaction.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)`

Constructors in biouml.standard.type with parameters of type DataCollection
`Unit(DataCollection parent, java.lang.String name)`
`Substance(DataCollection origin, java.lang.String name)`
`Stub(java.lang.String name, DataCollection parent)`
`Stub(java.lang.String name, DataCollection parent, java.lang.String type)`
`State(DataCollection parent, java.lang.String name)`
`Species(DataCollection parent, java.lang.String name)`
`SpecieReference(DataCollection origin, java.lang.String name)`
`SpecieReference(DataCollection origin, java.lang.String name, java.lang.String role)`
`SemanticRelation(DataCollection origin, java.lang.String name)`
`SemanticRelation(DataCollection origin, java.lang.String name, java.lang.String relationType)`
`RNA(DataCollection origin, java.lang.String name)`
`RelationType(DataCollection parent, java.lang.String name)`
`Referrer(DataCollection origin, java.lang.String name)`
`Reaction(DataCollection origin, java.lang.String name)`
`Protein(DataCollection origin, java.lang.String name)`
`Process(DataCollection parent, java.lang.String name)`
`Molecule(DataCollection origin, java.lang.String name)`
`LiteratureReference(DataCollection parent, java.lang.String name)`
`KineticType(DataCollection origin, java.lang.String name)`
`KineticType(DataCollection origin, java.lang.String name, java.lang.String title, java.lang.String description, boolean reversible, java.lang.String function, KineticType.Element[] elements)`
`GenericEntity(DataCollection origin, java.lang.String name)`
`Gene(DataCollection origin, java.lang.String name)`
`Function(DataCollection parent, java.lang.String name)`
`DiagramReference(DataCollection origin, java.lang.String name)`
`DiagramInfo(DataCollection parent, java.lang.String name)`
`DatabaseInfo(DataCollection parent, java.lang.String name)`
`Constant(DataCollection parent, java.lang.String name)`
`Concept(DataCollection origin, java.lang.String name)`
`Compartment(DataCollection origin, java.lang.String name)`
`Cell(DataCollection parent, java.lang.String name)`
`Biopolymer(DataCollection origin, java.lang.String name)`
`BaseSupport(java.lang.String name, DataCollection parent)`
`BaseSupport(java.lang.String name, DataCollection parent, java.lang.String type)`

Uses of DataCollection in biouml.standard.type.access

Methods in biouml.standard.type.access with parameters of type DataCollection
`boolean` | `SubstanceSqlTransformer.init(DataCollection owner)`
`boolean` | `RNASqlTransformer.init(DataCollection owner)`
`boolean` | `RelationSqlTransformer.init(DataCollection owner)`
`void` | `ReactionTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)`
`boolean` | `ReactionSqlTransformer.init(DataCollection owner)`
`boolean` | `ProteinSqlTransformer.init(DataCollection owner)`
`boolean` | `GeneSqlTransformer.init(DataCollection owner)`
`boolean` | `DiagramSqlTransformer.init(DataCollection owner)`
`boolean` | `DatabaseInfoSqlTransformer.init(DataCollection owner)`
`boolean` | `ConceptSqlTransformer.init(DataCollection owner)`
`boolean` | `CompartmentSqlTransformer.init(DataCollection owner)`
`boolean` | `CellSqlTransformer.init(DataCollection owner)`

Constructors in biouml.standard.type.access with parameters of type DataCollection
`TitleSqlIndex(DataCollection dc)`

Uses of DataCollection in biouml.workbench.diagram

Fields in biouml.workbench.diagram declared as DataCollection
`protected DataCollection` | `NewDiagramDialog.repository`

Methods in biouml.workbench.diagram that return DataCollection
`protected DataCollection` | `DiagramEditorHelper.getOrigin(java.awt.Point pt)`

Constructors in biouml.workbench.diagram with parameters of type DataCollection
`NewDiagramDialog(javax.swing.JFrame frame, java.lang.String title, DataCollection repository, Module module)`

Uses of DataCollection in ru.biosoft.access

Subinterfaces of DataCollection in ru.biosoft.access
`interface` | `CollectionUnion` Collection that is union of several collections.

Classes in ru.biosoft.access that implement DataCollection
`class` | `AbstractDataCollection` This abstract class provides default implementations for most of the methods in the `DataCollection` interface.
`class` | `DataCollectionUnion` Collection that is union of several collections.
`class` | `DataCollectionUnion2`
`class` | `DerivedDataCollection` General class for derived data collection.
`class` | `EntryCollection`
`class` | `FileCollection` FileCollection is `DataCollection` for storing `FileDataElement` objects .
`class` | `FileEntryCollection` Implements simple access procedures to databases in EMBL-like format.
`class` | `FileEntryCollection2`
`class` | `FilteredDataCollection`
`class` | `LocalRepository` LocalRepository creates hierarchical DataCollection.
`class` | `SqlDataCollection` DataCollection which store all information in SQL DBMS.
`class` | `TransformedDataCollection` Implemnation note: we are not propagate DataCollectionEvents, because this work is done by primary DataCollection (it has the same parent).
`class` | `VectorDataCollection` DataCollection based on `Vector` ( DataElement's is stored in Vector ).

Fields in ru.biosoft.access declared as DataCollection
`protected DataCollection` | `SqlTransformerSupport.owner`
`protected DataCollection` | `DerivedDataCollection.primaryCollection` Primary collection.
`protected DataCollection` | `AbstractTransformer.primaryCollection` Data collection of input data elements
`protected DataCollection` | `AbstractTransformer.transformedCollection` Data collection of output data elements

Methods in ru.biosoft.access that return DataCollection
`DataCollection` | `Transformer.getTransformedCollection()` Return data collection which contain input data element.
`DataCollection` | `Transformer.getPrimaryCollection()` Return data collection which contain output data element.
`DataCollection` | `Repository.createDataCollection(java.lang.String name, java.util.Properties properties, java.lang.String subDir, java.lang.String configName, java.io.File[] files, boolean copy, CreateDataCollectionController controller)` Creates new DataCollection.
`DataCollection` | `MutableDataElementSupport.getOrigin()`
`DataCollection` | `LocalRepository.createDataCollection(java.lang.String name, java.util.Properties properties, java.lang.String subDir, java.lang.String configName, java.io.File[] files, boolean copy, CreateDataCollectionController controller)` Creates new DataCollection with specified subdir (if not null) and config file name.
`DataCollection` | `DerivedDataCollection.getPrimaryCollection()`
`DataCollection` | `DataElementSupport.getOrigin()` Return origin data collection for this data element.
`DataCollection` | `DataElement.getOrigin()` Returns the collection this element belongs to.
`DataCollection` | `DataCollectionEvent.getOwner()`
`static DataCollection` | `CollectionFactory.createCollection(DataCollection parent, java.util.Properties properties)` Creates `DataCollection` with the specified parent and properties.
`static DataCollection` | `CollectionFactory.getDataCollection(java.lang.String completeName)` Returns the data collection with the speicified complete name relative of one of the data collection from data collections registered in root hash map.
`static DataCollection` | `CollectionFactory.createRepository(java.lang.String path)`
`static DataCollection` | `CollectionFactory.createTempMemoryCollection()`
`static DataCollection` | `CollectionFactory.createTransformedCollection(Repository parent, java.lang.String name, java.lang.Class transformerClass, java.lang.Class dataElementType, java.lang.String imgName, java.lang.String childrenImage, java.lang.String fileFilter, java.lang.String startTag, java.lang.String idTag, java.lang.String endTag, java.lang.String subDir)`
`static DataCollection` | `CollectionFactory.createDerivedCollection(Repository parent, java.lang.String name, java.util.Properties primary, java.util.Properties derived, java.lang.String subDir)`
`static DataCollection` | `CollectionFactory.createTransformedFileCollection(LocalRepository parent, java.lang.String name, java.lang.String filter, java.lang.Class transformerClass)`
`DataCollection` | `AbstractTransformer.getPrimaryCollection()` Gets primary data collection connected with transformer.
`DataCollection` | `AbstractTransformer.getTransformedCollection()` Gets transformed data collection connected with transformer.

Methods in ru.biosoft.access with parameters of type DataCollection
`void` | `Transformer.init(DataCollection dcInput, DataCollection dcOutput)` Initialize transformer for support optional methods.
`boolean` | `SqlTransformerSupport.init(DataCollection owner)`
`boolean` | `SqlTransformer.init(DataCollection owner)` Initialize transformer.
`java.util.List` | `QueryFilter.doQuery(DataCollection dc)`
`void` | `DataCollectionUnion2.addCollection(DataCollection child)`
`void` | `DataCollectionUnion.addCollection(DataCollection dc)`
`void` | `DataCollection.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)`
`void` | `DataCollection.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)`
`void` | `CollectionUnion.addCollection(DataCollection dc)` Add all elements from specified collection to union.
`static DataCollection` | `CollectionFactory.createCollection(DataCollection parent, java.util.Properties properties)` Creates `DataCollection` with the specified parent and properties.
`static void` | `CollectionFactory.releaseCollection(DataCollection dataCollection)` Releases all element of DataCollection `DataCollection`.
`static void` | `CollectionFactory.registerRoot(DataCollection dc)` Register DataCollection in root HashMap.
`static void` | `CollectionFactory.unregisterRoot(DataCollection dataCollection)` Unegister DataCollection in root HashMap.
`static DataElement` | `CollectionFactory.getDataElement(java.lang.String relativeName, DataCollection ancestor)` Returns the DataElement with the specified name.
`static java.lang.String` | `CollectionFactory.getRelativeName(DataElement child, DataCollection ancestor)` Returns complete name of DataElement relative its ancestor.
`static void` | `CollectionFactory.copyDataCollection(DataCollection source, DataCollection dest, FunctionJobControl jc, java.lang.String successMessage)`
`void` | `AbstractTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)` Initialize transformer for support optional methods.
`protected void` | `AbstractDataCollection.fireElementWillChange(java.lang.Object source, DataCollection owner, java.lang.String dataElementName, DataCollectionEvent primaryEvent)` Call `DataCollectionListener.elementWillChange(DataCollectionEvent)` for all listeners.
`protected void` | `AbstractDataCollection.fireElementChanged(java.lang.Object source, DataCollection owner, java.lang.String dataElementName, DataCollectionEvent primaryEvent)` AbstractDataCollection subclasses must call this method after a data element of the collection change.
`void` | `AbstractDataCollection.propagateElementWillChange(DataCollection source, DataCollectionEvent primaryEvent)`
`void` | `AbstractDataCollection.propagateElementChanged(DataCollection source, DataCollectionEvent primaryEvent)`

Constructors in ru.biosoft.access with parameters of type DataCollection
`VectorDataCollection(DataCollection parent, java.util.Properties properties)` Constructor to be used by `CollectionFactory` to create VectorDataCollection.
`VectorDataCollection(java.lang.String name, DataCollection parent, java.util.Properties properties)` Constructs data collection with specified name and parent.
`TransformedDataCollection(DataCollection parent, java.util.Properties properties)` Constructs transformed data collection with parent.
`SqlDataCollection(DataCollection parent, java.util.Properties properties)` Standart constructor for creating data collection.
`MutableDataElementSupport(java.lang.String name, DataCollection origin)`
`LocalRepository(DataCollection parent, java.util.Properties properties)` Constructs LocalRepository.
`FilteredDataCollection(DataCollection parent, java.util.Properties properties)` Constructor to be used by `CollectionFactory`.
`FilteredDataCollection(DataCollection parent, java.lang.String name, DataCollection primaryCollection, Filter filter, FunctionJobControl jobControl, java.util.Properties properties)` Creates FilteredDataCollection with the specified parent, name, primary data collection and filter.
`FileEntryCollection2(DataCollection parent, java.util.Properties properties)`
`FileEntryCollection(DataCollection parent, java.util.Properties properties)` Loads the data collection and its indexes (currently only for id).
`FileDataElement(java.lang.String name, DataCollection origin, java.io.File parent)` Constructs FileDataElement with specified name,parent DataCollection,and parent subdirectory
`FileDataElement(java.lang.String name, DataCollection origin, java.lang.String parent)` Constructs FileDataElement with specified name,parent DataCollection,and name of parent subdirectory
`FileCollection(DataCollection parent, java.util.Properties properties)` Constructs data collection with parent.
`EntryCollection(DataCollection parent, java.util.Properties properties)` Standard data collection constructor.
`Entry(DataCollection pParent, java.lang.String pName, java.lang.String pData, java.lang.String pFormat)` Construct data element.
`Entry(DataCollection pParent, java.lang.String pName, java.lang.String pData)` Construct data element with `Entry.TEXT_FORMAT`.
`Entry(DataCollection parent, java.lang.String name, java.io.File pFile, long pOffset, long pSize)` Construct big data element with `Entry.TEXT_FORMAT`.
`DerivedDataCollection(DataCollection parent, java.util.Properties properties)` Constructor to be used by `CollectionFactory`.
`DerivedDataCollection(DataCollection parent, java.lang.String name, DataCollection primaryDC, java.util.Properties properties)` Constructs DerivedDataCollection with the parent, name and primary data collection.
`DefaultQuerySystem(DataCollection dc)`
`DataElementSupport(java.lang.String name, DataCollection origin)` Construct data element.
`DataElementRef(java.lang.String name, DataCollection origin, java.lang.String elementName)`
`DataCollectionUnion2(DataCollection dc, java.util.Properties properties)`
`DataCollectionUnion2(DataCollection[] collections, java.util.Properties properties)`
`DataCollectionUnion(DataCollection dc, java.util.Properties properties)` Make union of all collections contained in specified data collection.
`DataCollectionRemoveUndo(DataElement elementWillRemove, DataCollection parent)`
`DataCollectionInfo(DataCollection dc, java.util.Properties properties, org.apache.log4j.Category cat)`
`DataCollectionEvent(java.lang.Object source, int type, DataCollection owner, java.lang.String name, DataCollectionEvent primaryEvent)` Constructs the DataCollectionEvent object.
`DataCollectionAddUndo(DataElement elementWillAdd, DataCollection parent)`
`AbstractDataCollection(DataCollection parent, java.util.Properties properties)` Constructor to be used by `CollectionFactory` to creata DataCollection.
`AbstractDataCollection(java.lang.String name, DataCollection parent, java.util.Properties properties)` Constructs data collection with specified name and parent.

Uses of DataCollection in ru.biosoft.access.repository

Fields in ru.biosoft.access.repository declared as DataCollection
`protected DataCollection` | `RepositoryPane.rootDataCollection`
`protected DataCollection` | `DataCollectionTreeModelAdapter.root`

Methods in ru.biosoft.access.repository that return DataCollection
`DataCollection` | `RepositoryPane.getRootDataCollection()`

Constructors in ru.biosoft.access.repository with parameters of type DataCollection
`RepositoryPane(DataCollection repository)`

Uses of DataCollection in ru.biosoft.access.search

Fields in ru.biosoft.access.search declared as DataCollection
`protected DataCollection` | `DataSearch.primaryCollection`

Constructors in ru.biosoft.access.search with parameters of type DataCollection
`DataSearch(java.lang.String title, DataCollection collection)`

Uses of DataCollection in ru.biosoft.access.support

Fields in ru.biosoft.access.support declared as DataCollection
`protected DataCollection` | `NewDataElementDialog.dc`
`protected DataCollection` | `DataCollectionMultyChoicePane.dataCollection` DataCollection from wich data element names are selected.

Methods in ru.biosoft.access.support that return DataCollection
`abstract DataCollection` | `DataCollectionMultyChoicePropertyEditor.getDataCollection()` Should return the DataCollection containing possible values.
`DataCollection` | `DatabaseEntry.getOrigin()`

Methods in ru.biosoft.access.support with parameters of type DataCollection
`static java.lang.String` | `IdGenerator.generateUniqueName(DataCollection dc, java.text.DecimalFormat formatter)`
`void` | `BeanInfoEntryTransformer.init(DataCollection primaryCollection, DataCollection transformedCollection)` Initialize transformer.

Constructors in ru.biosoft.access.support with parameters of type DataCollection
`NewDataElementDialog(java.awt.Component parent, java.lang.String title, DataCollection dc)`
`NameListToListModelAdapter(DataCollection dataCollection)`
`NameListToComboBoxModelAdapter(DataCollection dataCollection)`
`DataCollectionRowModelAdapter(DataCollection dc)`
`DataCollectionMultyChoicePane(DataCollection dc, java.lang.String[] selectedValues, boolean isSorted)`
`DataCollectionMultyChoiceDialog(java.awt.Component parent, java.lang.String title, DataCollection dc, java.lang.String[] selectedValues, boolean isSorted)`
`DatabaseEntry(DataCollection origin, java.lang.String name, Entry entry)`

Uses of DataCollection in ru.biosoft.gui.wizard

Methods in ru.biosoft.gui.wizard that return DataCollection
`DataCollection` | `WizardTarget.getSequences()`
`DataCollection` | `WizardTarget.getProfiles()`

Uses of DataCollection in ru.biosoft.plugins

Classes in ru.biosoft.plugins that implement DataCollection
`class` | `Plugins` This class is used to show 'visible' plugins in plugins tab of repository pane.
`class` | `VisiblePlugin` Superclass for all 'visible' plugins.

Methods in ru.biosoft.plugins that return DataCollection
`static DataCollection` | `Plugins.getPlugins()`

Constructors in ru.biosoft.plugins with parameters of type DataCollection
`VisiblePlugin(DataCollection parent, java.util.Properties properties)` Constructor to be used by `CollectionFactory` to create a Plugin.

Uses of DataCollection in ru.biosoft.plugins.javascript

Classes in ru.biosoft.plugins.javascript that implement DataCollection
`class` | `ClassInfo`
`class` | `HostObjectInfo` Provides description of JavaScript host object.
`class` | `JScriptVisiblePlugin` Utility class used as root tree for JavaScript functions and host objects.

Methods in ru.biosoft.plugins.javascript that return DataCollection
`DataCollection` | `JScriptVisiblePlugin.getFunctions()`
`DataCollection` | `JScriptVisiblePlugin.getHostObjects()`

Methods in ru.biosoft.plugins.javascript with parameters of type DataCollection
`static void` | `JScriptContext.loadFunctionExtensions(java.lang.String extensionPointId, DataCollection functions)` Load all executable extensions for the specified extension point.
`static void` | `JScriptContext.defineFunction(org.eclipse.core.runtime.IConfigurationElement element, org.mozilla.javascript.Context context, org.mozilla.javascript.ScriptableObject scope, DataCollection functions)`
`static void` | `JScriptContext.loadHostObjectExtensions(java.lang.String extensionPointId, DataCollection hostObjects)`
`static void` | `JScriptContext.defineHostObject(org.eclipse.core.runtime.IConfigurationElement element, org.mozilla.javascript.Context context, org.mozilla.javascript.ScriptableObject scope, DataCollection hostObjects)`

Constructors in ru.biosoft.plugins.javascript with parameters of type DataCollection
`PropertyInfo(java.lang.String name, DataCollection parent)` Creates info for the specified property.
`JScriptVisiblePlugin(DataCollection parent, java.util.Properties properties)` Constructor to be used by `CollectionFactory` to create a Plugin.
`HostObjectInfo(java.lang.String name, DataCollection parent)` Creates info for the specified host object.
`FunctionInfo(java.lang.String name, DataCollection parent)` Creates info for the specified JavaScript function.
`ClassInfo(java.lang.String name, DataCollection parent)` Creates info for the specified Java class.

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