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## Uses of Package
biouml.model

Packages that use biouml.model
biouml.model |
biouml.model.dynamics |
biouml.model.htmlgen |
biouml.model.util |
biouml.plugins.cellml |
biouml.plugins.ginsim |
biouml.plugins.gxl |
biouml.plugins.jgraph |
biouml.plugins.matlab |
biouml.plugins.sbml |
biouml.plugins.simulation |
biouml.plugins.simulation.java |
biouml.plugins.simulation.plot |
biouml.plugins.svg |
biouml.standard |
biouml.standard.diagram |
biouml.standard.filter |
biouml.workbench |
biouml.workbench.diagram |
biouml.workbench.module |

Classes in biouml.model used by biouml.model
Compartment General definition of the compartment as a container for nodes and edges between them.
Diagram
DiagramElement Common definition of diagram element.
DiagramElementBeanInfo Utility class containing common metada for all diagram elements.
DiagramFilter Filter cab be applied to any diagram view.
DiagramType Formalyze the diagram attributes.
DiagramTypeConverter General interface to convert diagram type.
DiagramTypeConverter.YesConverter
DiagramViewBuilder
DiagramViewOptions General class to store options for diagram painting.
Edge Edge is directed relation between two diagram nodes, called "input" and "output".
EquivalentNodeGroup Group of equivalent nodes.
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
ModuleType
Node Diagram node element
NodeBeanInfo
NodeInfo Utility class for `QueryEngine`.
QueryEngine
QueryOptions
Role
SemanticController

Classes in biouml.model used by biouml.model.dynamics
Compartment General definition of the compartment as a container for nodes and edges between them.
DefaultDiagramViewBuilder Default implementation of `DiagramViewBuilder`.
Diagram
DiagramElement Common definition of diagram element.
DiagramType Formalyze the diagram attributes.
DiagramTypeSupport Stub implementation of DiagramType interface.
DiagramViewBuilder
DiagramViewOptions General class to store options for diagram painting.
Edge Edge is directed relation between two diagram nodes, called "input" and "output".
Node Diagram node element
Role
SemanticController

Classes in biouml.model used by biouml.model.htmlgen
Diagram
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.

Classes in biouml.model used by biouml.model.util
Compartment General definition of the compartment as a container for nodes and edges between them.
Diagram
DiagramElement Common definition of diagram element.
Edge Edge is directed relation between two diagram nodes, called "input" and "output".
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
Node Diagram node element

Classes in biouml.model used by biouml.plugins.cellml
DefaultDiagramViewBuilder Default implementation of `DiagramViewBuilder`.
DefaultSemanticController
Diagram
DiagramImporter General interface to import digaram, for example from SBML or CellML file.
DiagramType Formalyze the diagram attributes.
DiagramTypeSupport Stub implementation of DiagramType interface.
DiagramViewBuilder
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
ModuleType
Node Diagram node element
QueryEngine
SemanticController

Classes in biouml.model used by biouml.plugins.ginsim
Compartment General definition of the compartment as a container for nodes and edges between them.
DefaultDiagramViewBuilder Default implementation of `DiagramViewBuilder`.
Diagram
DiagramExporter General interface to export digaram in the specified format, for example in SBML format or as PNG image.
DiagramImporter General interface to import digaram, for example from SBML or CellML file.
DiagramType Formalyze the diagram attributes.
DiagramTypeSupport Stub implementation of DiagramType interface.
DiagramViewBuilder
DiagramViewOptions General class to store options for diagram painting.
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
Node Diagram node element

Classes in biouml.model used by biouml.plugins.gxl
Compartment General definition of the compartment as a container for nodes and edges between them.
Diagram
DiagramExporter General interface to export digaram in the specified format, for example in SBML format or as PNG image.
DiagramType Formalyze the diagram attributes.
Edge Edge is directed relation between two diagram nodes, called "input" and "output".
Node Diagram node element

Classes in biouml.model used by biouml.plugins.jgraph
Compartment General definition of the compartment as a container for nodes and edges between them.
Diagram

Classes in biouml.model used by biouml.plugins.matlab
DiagramElement Common definition of diagram element.
Role

Classes in biouml.model used by biouml.plugins.sbml
Compartment General definition of the compartment as a container for nodes and edges between them.
DefaultDiagramViewBuilder Default implementation of `DiagramViewBuilder`.
DefaultSemanticController
Diagram
DiagramElement Common definition of diagram element.
DiagramExporter General interface to export digaram in the specified format, for example in SBML format or as PNG image.
DiagramImporter General interface to import digaram, for example from SBML or CellML file.
DiagramType Formalyze the diagram attributes.
DiagramTypeSupport Stub implementation of DiagramType interface.
DiagramViewBuilder
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
ModuleType
Node Diagram node element
QueryEngine
Role
SemanticController

Classes in biouml.model used by biouml.plugins.simulation
Diagram
DiagramElement Common definition of diagram element.
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
Role

Classes in biouml.model used by biouml.plugins.simulation.java
DiagramElement Common definition of diagram element.
Role

Classes in biouml.model used by biouml.plugins.simulation.plot
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.

Classes in biouml.model used by biouml.plugins.svg
Diagram
DiagramExporter General interface to export digaram in the specified format, for example in SBML format or as PNG image.

Classes in biouml.model used by biouml.standard
Diagram
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
ModuleType
NodeInfo Utility class for `QueryEngine`.
QueryEngine
QueryEngineSupport
QueryOptions
QueryOptionsBeanInfo Created by IntelliJ IDEA.

Classes in biouml.model used by biouml.standard.diagram
Compartment General definition of the compartment as a container for nodes and edges between them.
DefaultDiagramViewBuilder Default implementation of `DiagramViewBuilder`.
DefaultSemanticController
Diagram
DiagramElement Common definition of diagram element.
DiagramFilter Filter cab be applied to any diagram view.
DiagramType Formalyze the diagram attributes.
DiagramTypeSupport Stub implementation of DiagramType interface.
DiagramViewBuilder
DiagramViewOptions General class to store options for diagram painting.
Edge Edge is directed relation between two diagram nodes, called "input" and "output".
EquivalentNodeGroup Group of equivalent nodes.
Node Diagram node element
Role
SemanticController

Classes in biouml.model used by biouml.standard.filter
AbstractFilter Utility class that provides support for basic diagram filter operations.
Compartment General definition of the compartment as a container for nodes and edges between them.
Diagram
DiagramElement Common definition of diagram element.
DiagramFilter Filter cab be applied to any diagram view.
EquivalentNodeGroup Group of equivalent nodes.
Node Diagram node element

Classes in biouml.model used by biouml.workbench
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.

Classes in biouml.model used by biouml.workbench.diagram
Diagram
DiagramElement Common definition of diagram element.
DiagramExporter General interface to export digaram in the specified format, for example in SBML format or as PNG image.
DiagramImporter General interface to import digaram, for example from SBML or CellML file.
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.
SemanticController

Classes in biouml.model used by biouml.workbench.module
Module The module data is hierarchically organised in following manner: Diagrams `DataCollection` of `Diagram`s.

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