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## Package biouml.standard.type

Interface Summary
Base | General interface to be implemented by all classes to be used as BioUML diagram elements.
LocalisedString |
ProteinProperties | Defines protein properties constants.
Relation | Intermediary class to generalize what is common for all relations/edges as well as to define common constants.
SpeciesSpecific | General interface for species specific entities.
Type | Definition of data elemnt types (roles).

Class Summary
BaseSupport | Base class for all data element types.
Biopolymer |
BiopolymerBeanInfo | Utility class containing common metada for all molecules.
Cell | Stub
CellBeanInfo | Utility class containing common metada for all molecules.
Compartment | Stub
CompartmentBeanInfo |
Concept |
ConceptBeanInfo |
ConceptBeanInfo.ConceptTypeEditor |
Constant | Some constant that can be used in kinetic or other equations.
ConstantBeanInfo |
DatabaseInfo | Many data elements can refer to other databases through its database references field.
DatabaseInfoBeanInfo |
DatabaseReference | General defintion of reference to external database.
DatabaseReferenceBeanInfo |
DiagramInfo | Defines common properties for diagram description.
DiagramInfoBeanInfo |
DiagramReference |
EditionHistory | General class defining editing history.
Function | Molecular function is an activity or task performed by a gene product or other biological entity.
FunctionBeanInfo |
Gene | Stub
GeneBeanInfo |
GenericEntity |
GenericEntityBeanInfo | Utility class containing common metada for all generic entities.
ImageDescriptor |
ImageDescriptorBeanInfo |
KineticLaw |
KineticLawBeanInfo | Utility class containing common metada for all generic entities.
KineticType | Definition of KinetReactionType defines: - meta information about reaction
KineticType.Element | This class is used to specify roles for each element in kinetic function.
KineticType.ElementBeanInfo |
KineticType.ElementBeanInfo.RoleEditor |
KineticTypeBeanInfo | Utility class containing common metada for all generic entities.
LiteratureReference | Defines coomon properties of literature reference.
LiteratureReferenceBeanInfo |
MessageBundle |
Molecule |
MoleculeBeanInfo | Utility class containing common metada for all molecules.
MultiLineHtmlFieldEditor |
Process | Biological process is a biological goal that requires more than one function.
ProcessBeanInfo |
Protein | Stub
ProteinBeanInfo |
ProteinBeanInfo.FunctionalStateEditor |
ProteinBeanInfo.ModificationEditor |
ProteinBeanInfo.StructureEditor |
Reaction |
ReactionBeanInfo |
Referrer | Extention of GenericEntity that contains references to other databases and literature sources.
ReferrerBeanInfo |
ReferrerBeanInfo.LiteratureReferencesEditor |
RelationType | Unit to specify kinetic constat, parameter or variable units.
RNA | Stub
RNABeanInfo |
RNABeanInfo.RnaTypeEditor |
SemanticRelation | SemanticRelatio specified semantic relationships between concepts (kernels) assotiated with two nodes on the diagram.
SemanticRelationBeanInfo |
SemanticRelationBeanInfo.ParticipationTypeEditor |
SpecieReference | SpecieReference specifies role of molecule involved in the `Reaction`.
SpecieReferenceBeanInfo |
SpecieReferenceBeanInfo.ModifierActionEditor |
SpecieReferenceBeanInfo.SpecieReferenceEditor |
Species | General definition for 'Species' concept.
State | State, stage or variant of biological system or its subunits.
StateBeanInfo |
Stub |
Stub.Note |
Stub.NoteBeanInfo |
Stub.NoteLink |
Stub.NoteLinkBeanInfo |
Substance | Stub
SubstanceBeanInfo |
Unit | Unit to specify kinetic constat, parameter or variable units.
UnitBeanInfo |

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