| HEADER | |||||||
| PREV NEXT | FRAMES NO FRAMES | |||||||
| Classes in biouml.standard.type used by biouml.model | |
| Compartment General definition of the compartment as a container for nodes and edges between them. | |
| DefaultSemanticController | |
| Diagram | |
| DiagramElement Common definition of diagram element. | |
| Edge Edge is directed relation between two diagram nodes, called "input" and "output". | |
| EquivalentNodeGroup Group of equivalent nodes. | |
| Node Diagram node element | |
| QueryEngine | |
| SemanticController | |
| Classes in biouml.standard.type used by biouml.modules.genenet | |
| GeneNetQueryEngine | |
| GeneNetSemanticController | |
| Classes in biouml.standard.type used by biouml.modules.genenet.type | |
| Cell Definition of entry for GeneNet 'Cell' table. | |
| CellBeanInfo | |
| Compartment Definition of entry for GeneNet 'Compartment' table. | |
| CompartmentBeanInfo | |
| DiagramDescription Definition of entry for GeneNet 'Scheme' table. | |
| Gene Definition of entry for GeneNet 'Gene' table. | |
| GeneBeanInfo | |
| Proces Definition of entry for GeneNet 'Process' table. | |
| ProcesBeanInfo | |
| Protein Definition of entry for GeneNet 'Protein' table. | |
| ProteinBeanInfo | |
| Reaction Definition of entry for GeneNet 'Relation' table. | |
| ReactionBeanInfo | |
| RNA Definition of entry for GeneNet 'RNA' table. | |
| RNABeanInfo | |
| Substance Definition of entry for GeneNet 'Substance' table. | |
| SubstanceBeanInfo | |
| Classes in biouml.standard.type used by biouml.modules.kegg | |
| KeggPathwayQueryEngine | |
| KeggPathwaySemanticController | |
| Classes in biouml.standard.type used by biouml.modules.kegg.type | |
| Compound Stub | |
| Enzyme Stub | |
| Classes in biouml.standard.type used by biouml.modules.transpath | |
| TranspathQueryEngine | |
| TranspathSemanticController | |
| Classes in biouml.standard.type used by biouml.modules.transpath.type | |
| Molecule Stub | |
| MoleculeBeanInfo | |
| Reaction | |
| Classes in biouml.standard.type used by biouml.standard | |
| StandardQueryEngine | |
| Classes in biouml.standard.type used by biouml.standard.diagram.pathway | |
| PathwayDiagramViewBuilder Default implementation of DiagramViewBuilder. | |
| PathwaySemanticController | |
| Classes in biouml.standard.type used by biouml.standard.type | |
| Base General interface to be implemented by all classes to be used as BioUML diagram elements. | |
| BaseSupport Base class for all data element types. | |
| Biopolimer | |
| BiopolimerBeanInfo Utility class containing common metada for all molecules. | |
| Cell Stub | |
| CellBeanInfo Utility class containing common metada for all molecules. | |
| Compartment Stub | |
| CompartmentBeanInfo | |
| DiagramDescription Defines coomon properties for diagram description. | |
| EnzymaticReaction Stub | |
| Expression Stub | |
| Gene Stub | |
| GeneBeanInfo | |
| GenericEntity | |
| Molecule | |
| MoleculeBeanInfo Utility class containing common metada for all molecules. | |
| Protein Stub | |
| ProteinBeanInfo | |
| Reaction | |
| ReactionBeanInfo | |
| Referrer Extention of GenericEntity that contains references to other databases and literature sources. | |
| ReferrerBeanInfo | |
| Relation Intermediary class to generalize what is common for all relations/edges. | |
| RelationBeanInfo | |
| RNA Stub | |
| RNABeanInfo | |
| SpeciesSpecific General interface for species specific entities. | |
| Substance Stub | |
| SubstanceBeanInfo | |
| Transport Stub | |
| FOOTER | |||||||
| PREV NEXT | FRAMES NO FRAMES | |||||||