biouml.standard.type
Class LiteratureReference

java.lang.Object
  |
  +--com.beanexplorer.swing.table.Option
        |
        +--ru.biosoft.access.MutableDataElementSupport
              |
              +--biouml.standard.type.LiteratureReference

public class LiteratureReference

extends MutableDataElementSupport

Defines coomon properties of literature reference. Our format is based on MEDLINE (PubMed) literature reference format. Here we use major fields of MEDLINE and ommit some accessory fields. From the other hand we add some utility fields allowing a user to organize and categorize references by user defined themes, key words and importance, as well as to store user comments and related URLs.

pending inherit from {@link GenericEntity}. http://www.ncbi.nlm.nih.gov/entrez/utils/pmfetch.fcgi?db=PubMed&id=12075356&report=MEDLINE&mode=text

Methods inherited from class com.beanexplorer.swing.table.Option

setParent, getParent, addPropertyChangeListener, removePropertyChangeListener, copyListenersTo

Methods inherited from class java.lang.Object

getClass, hashCode, equals, notify, notifyAll, wait, wait, wait

Field Detail

importance

public int importance

The reference importance. Using this property user can organise references by their importance.

public LiteratureReference(DataCollection parent, String name)

public String getAffilation()

public String getAuthors()

public String getComment()

public String getFullTextURL()

public int getImportance()

public String getIssue()

public String getJournalTitleAbbrevation()

public String getKeywords()

public String getLanguage()

public String getMedlineId()

public String getPagination()

public String getPublicationAbstract()

public String getPublicationDate()

public String getPublicationType()

public String getPubMedId()

public String getRelatedURLs()

public String getSource()

Returns composite field containing bibliographic information. (MEDLINE SO field).

public String getTheme()

public String getTitle()

public String getVolume()

public void setAffilation(String affilation)

public void setAuthors(String authors)

public void setComment(String comment)

public void setFullTextURL(String fullTextURL)

public void setImportance(int importance)

public void setIssue(String issue)

public void setJournalTitleAbbrevation(String journalTitleAbbrevation)

public void setKeywords(String keywords)

public void setLanguage(String language)

public void setMedlineId(String medlineId)

public void setPagination(String pagination)

public void setPublicationAbstract(String publicationAbstract)

public void setPublicationDate(String publicationDate)

public void setPublicationType(String publicationType)

public void setPubMedId(String pubMedId)

public void setRelatedURLs(String relatedURLs)

public void setTheme(String theme)

public void setTitle(String title)

public void setVolume(String volume)

Association Links

to Class java.lang.String

Unique number assigned to each MEDLINE citation (MEDLINE UI field).

to Class java.lang.String

Unique number assigned to each PubMed citation. (MEDLINE PMID field).

to Class java.lang.String

Authors (MEDLINE AU field).

pending use full author names (MEDLINE FAU field)., use array of string: one string for each author.

to Class java.lang.String

Institutional affiliation and address of the first author, and grant numbers. (MEDLINE AD field).

to Class java.lang.String

The title of the article (MEDLINE TI field).

to Class java.lang.String

Standard journal title abbreviation (MEDLINE TA field).

to Class java.lang.String

Journal volume (MEDLINE VI field).

to Class java.lang.String

The number of the issue, part, or supplement of the journal in which the article was published (MEDLINE IP field).

to Class java.lang.String

The full pagination of the article (MEDLINE PG field).

to Class java.lang.String

The publication abstract. (MEDLINE AB field).

to Class java.lang.String

Link to the full-text of article at provider's website (MEDLINE URLF field).

to Class java.lang.String

The date the article was published (MEDLINE DP field).

to Class java.lang.String

The language in which the article was published (MEDLINE LA field).

to Class java.lang.String

The type of material the article represents (MEDLINE PT field).

to Class java.lang.String

Using this property user can categorize references by user defined themes.

to Class java.lang.String

A set of user defined key words assotioated with a literature reference.

to Class java.lang.String

A set of URLs that are related with the reference. This URL's can refer to some resources, for example software, that is described in the article.

pending use array of string: one string for each URL.

to Class java.lang.String

Arbitrary user comment assitiated with this refeence.