Uses of Diagram in biouml.editor

 

Constructors in biouml.editor with parameters of type Diagram

DiagramDocument.DiagramDocument(Diagram diagram)

DiagramEditorHelper.DiagramEditorHelper(Diagram diagram)

NewDiagramElementDialog.NewDiagramElementDialog(JFrame frame, String title, DataCollection parent, Diagram diagram, Class clazz)

ViewerDiagramFilter.ViewerDiagramFilter(Diagram diagram)

 

Methods in biouml.editor that return Diagram
Diagram	DiagramDocument.getDiagram()
static Diagram	NewDiagramDialog.createDiagram(DiagramType type, String diagramName, DataCollection origin)
static Diagram	NewDiagramDialog.createDiagram(String diagramTypeClassName, String diagramName, DataCollection origin)
Diagram	ViewerDiagramFilter.getDiagram()

 

Methods in biouml.editor with parameters of type Diagram
ViewPane	BioUMLApplication.createViewPane(Diagram diagram)
ViewPane	BioUMLEditor.createViewPane(Diagram diagram)
static Image	SaveAsImageAction.generateDiagramImage(Diagram diagram)
void	SearchLinkedPanel.setDiagram(Diagram diagram)

 

Uses of Diagram in biouml.editor.graphlayout

 

Methods in biouml.editor.graphlayout with parameters of type Diagram
void	CellLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)
void	ForceDirectedLayoutManager.layout(Diagram diagram, Node center, Node selectedNode)
void	ForceDirectedLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)
void	GraphLayout.layout(Diagram diagram, Node center, Node selectedNode)
void	GraphLayout.layout(Diagram diagram, Node center, Node[] nodes, Node selectedNode)
void	LayeredLayoutManager.layout(Diagram diagram, Node center, Node selectedNode)
void	LayeredLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)
void	LayeredOptimizedLayoutManager.layout(Diagram diagram, Node center, Node selectedNode)
void	LayeredOptimizedLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)

 

Uses of Diagram in biouml.model

 

Methods in biouml.model that return Diagram
Diagram	Module.getDiagram(String name)

 

Methods in biouml.model with parameters of type Diagram
CompositeView	DefaultDiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)           Creates the diagram view
Action[]	DefaultDiagramViewBuilder.getInsertActions(Diagram diagram)
DiagramFilter	DiagramType.getDiagramFilter(Diagram diagram)
CompositeView	DiagramViewBuilder.createDiagramView(Diagram diagram, Graphics g)
Action[]	DiagramViewBuilder.getInsertActions(Diagram diagram)
void	Module.putDiagram(Diagram diagram)
Node[]	QueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)
Node[]	QueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)
Node[]	QueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)

 

Uses of Diagram in biouml.model.dynamics

 

Constructors in biouml.model.dynamics with parameters of type Diagram

VariablesDataCollection.VariablesDataCollection(DataCollection parent, Diagram diagram)

 

Methods in biouml.model.dynamics with parameters of type Diagram
DiagramFilter	EModelDiagramType.getDiagramFilter(Diagram diagram)

 

Uses of Diagram in biouml.model.htmlgen

 

Constructors in biouml.model.htmlgen with parameters of type Diagram

GenerateHTMLDialog.GenerateHTMLDialog(JDialog dialog, String title, Module module, Diagram diagram)

GenerateHTMLDialog.GenerateHTMLDialog(JFrame frame, String title, Module module, Diagram diagram)

 

Methods in biouml.model.htmlgen with parameters of type Diagram
static void	GenerateHTMLDialog.genHTML(Diagram diagram, File outputFolder, File templateFile, Category cat)

 

Uses of Diagram in biouml.model.util

 

Methods in biouml.model.util that return Diagram
Diagram	DiagramXMLReader.read()
Diagram	DiagramXMLReader.read(DataCollection origin, Module module)

 

Methods in biouml.model.util with parameters of type Diagram
void	DiagramXMLWriter.write(Diagram sourceDiagram, Transformer transformer)
void	DiagramXMLWriter.write(Diagram sourceDiagram)

 

Uses of Diagram in biouml.modules.genenet

 

Methods in biouml.modules.genenet with parameters of type Diagram
DiagramFilter	GeneNetDiagramType.getDiagramFilter(Diagram diagram)
Node[]	GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)
Node[]	GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)
Node[]	GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)

 

Uses of Diagram in biouml.modules.kegg

 

Methods in biouml.modules.kegg with parameters of type Diagram
DiagramFilter	KeggPathwayDiagramType.getDiagramFilter(Diagram diagram)
Node[]	KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)
Node[]	KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)
Node[]	KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)

 

Uses of Diagram in biouml.modules.kegg.type.access

 

Methods in biouml.modules.kegg.type.access that return Diagram
Diagram	DiagramReader.read(DataCollection origin, String name, Module module)

 

Uses of Diagram in biouml.modules.transpath

 

Methods in biouml.modules.transpath with parameters of type Diagram
DiagramFilter	TranspathDiagramType.getDiagramFilter(Diagram diagram)
Node[]	TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)
Node[]	TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)
Node[]	TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)

 

Uses of Diagram in biouml.standard

 

Methods in biouml.standard with parameters of type Diagram
Node[]	StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)
Node[]	StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)
Node[]	StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)

 

Uses of Diagram in biouml.standard.diagram.pathway

 

Methods in biouml.standard.diagram.pathway with parameters of type Diagram
DiagramFilter	PathwayDiagramType.getDiagramFilter(Diagram diagram)

 

Uses of Diagram in biouml.standard.filter

 

Constructors in biouml.standard.filter with parameters of type Diagram

BiopolimerDiagramFilter.BiopolimerDiagramFilter(Diagram diagram)