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## Hierarchy For All Packages

Package Hierarchies:
  <default>, biouml, biouml.editor, biouml.editor.graphlayout, biouml.editor.module, biouml.editor.resources, biouml.editor.tool, biouml.model, biouml.model.dynamics, biouml.model.dynamics.resources, biouml.model.htmlgen, biouml.model.util, biouml.modules, biouml.modules.genenet, biouml.modules.genenet.access, biouml.modules.genenet.type, biouml.modules.kegg, biouml.modules.kegg.type, biouml.modules.kegg.type.access, biouml.modules.kegg.type.resources, biouml.modules.transpath, biouml.modules.transpath.type, biouml.modules.transpath.type.access, biouml.modules.transpath.type.resources, biouml.standard, biouml.standard.diagram, biouml.standard.diagram.pathway, biouml.standard.diagram.pathway.resources, biouml.standard.filter, biouml.standard.type, biouml.standard.type.access, com, com.developmentontheedge, com.developmentontheedge.application, com.developmentontheedge.application.action, com.developmentontheedge.application.action.resources, com.developmentontheedge.application.dialog, com.developmentontheedge.application.dialog.resources, com.developmentontheedge.jobcontrol, com.developmentontheedge.jobcontrol.action, com.developmentontheedge.jobcontrol.action.resources, com.developmentontheedge.print, ru, ru.biosoft, ru.biosoft.access, ru.biosoft.access.repository, ru.biosoft.access.repository.res, ru.biosoft.access.support, ru.biosoft.graphics, ru.biosoft.graphics.editor, ru.biosoft.graphics.encoders, ru.biosoft.graphics.font, ru.biosoft.util

## Class Hierarchy

- class com.developmentontheedge.jobcontrol.AbstractJobControl (implements com.developmentontheedge.jobcontrol.JobControl)
  - class com.developmentontheedge.jobcontrol.ClassJobControl
  - class com.developmentontheedge.jobcontrol.FunctionJobControl
- class ru.biosoft.access.AbstractTransformer (implements ru.biosoft.access.Transformer)
  - class ru.biosoft.access.support.DatabaseEntryTransformer
  - class biouml.modules.genenet.access.DiagramTransformer
  - class biouml.modules.kegg.type.access.DiagramTransformer
  - class biouml.standard.type.access.DiagramXMLTransformer
  - class biouml.modules.genenet.access.ExpertTransformer
  - class biouml.modules.genenet.access.LiteratureReferenceTransformer
  - class ru.biosoft.access.support.TagEntryTransformer
    - class ru.biosoft.access.support.BeanInfoEntryTransformer
      - class biouml.standard.type.access.GenericEntityTransformer
        - class biouml.standard.type.access.CompartmentTransformer
          - class biouml.modules.genenet.access.CompartmentTransformer
        - class biouml.standard.type.access.LiteratureReferenceTransformer
        - class biouml.modules.transpath.type.access.MoleculeTransformer
        - class biouml.standard.type.access.MoleculeTransformer
          - class biouml.standard.type.access.CellTransformer
            - class biouml.modules.genenet.access.CellTransformer
          - class biouml.standard.type.access.GeneTransformer
            - class biouml.modules.genenet.access.GeneTransformer
          - class biouml.modules.genenet.access.ProcessTransformer
          - class biouml.standard.type.access.ProteinTransformer
            - class biouml.modules.genenet.access.ProteinTransformer
          - class biouml.standard.type.access.RNATransformer
            - class biouml.modules.genenet.access.RNATransformer
          - class biouml.standard.type.access.SubstanceTransformer
            - class biouml.modules.genenet.access.SubstanceTransformer
        - class biouml.standard.type.access.ReactionTransformer
          - class biouml.modules.genenet.access.RelationTransformer
        - class biouml.standard.type.access.RelationTransformer
    - class biouml.modules.kegg.type.access.CompoundTransformer
    - class biouml.modules.kegg.type.access.EnzymeTransformer
    - class biouml.modules.kegg.type.access.ReactionTransformer
    - class biouml.modules.transpath.type.access.ReactionTransformer
  - class ru.biosoft.access.XMLTransformer
- class com.developmentontheedge.application.action.ActionInitializer
- class com.developmentontheedge.application.action.ActionManager
- class com.developmentontheedge.application.Application
- class com.developmentontheedge.application.ApplicationUtils
- class ru.biosoft.util.ApplicationUtils
- class ru.biosoft.access.support.ArrayPropertyValueFilterBeanInfo.FilterPropertyEditor (implements PropertyEditorEx)
- class ru.biosoft.graphics.ArrowView.Tip
- class biouml.editor.BioUMLEditorLauncher
- class biouml.editor.BioUMLModelerLauncher
- class biouml.editor.BioUMLViewerLauncher
- class ru.biosoft.graphics.editor.BoxSelector (implements ru.biosoft.graphics.editor.ViewSelector)
  - class ru.biosoft.graphics.editor.ResizingBoxSelector
- class ru.biosoft.access.CollectionFactory
- class com.developmentontheedge.jobcontrol.CurrentJobControl
- class ru.biosoft.access.DataCollectionInfo
- class ru.biosoft.access.DataCollectionInfoParser
- class ru.biosoft.access.repository.DataCollectionTreeModelAdapter (implements ru.biosoft.access.DataCollectionListener, TreeModel)
- class ru.biosoft.access.repository.DataCollectionTreeModelAdapter2 (implements ru.biosoft.access.DataCollectionListener, TreeModel)
- class ru.biosoft.access.DataElementSupport (implements ru.biosoft.access.DataElement)
  - class ru.biosoft.access.AbstractDataCollection (implements ru.biosoft.access.DataCollection)
    - class ru.biosoft.access.DataCollectionUnion (implements ru.biosoft.access.CollectionUnion)
    - class ru.biosoft.access.DerivedDataCollection
      - class ru.biosoft.access.FilteredDataCollection (implements ru.biosoft.access.DataCollectionListener)
      - class biouml.model.Module
      - class ru.biosoft.access.TransformedDataCollection (implements ru.biosoft.access.DataCollectionListener)
      - class biouml.model.dynamics.VariablesDataCollection
    - class biouml.modules.transpath.type.access.DummyRelationDataCollection
    - class ru.biosoft.access.EntryCollection
      - class ru.biosoft.access.FileEntryCollection
      - class ru.biosoft.access.FileEntryCollection2
    - class biouml.modules.genenet.access.MglDataCollection
    - class ru.biosoft.access.SQLDataCollection
    - class ru.biosoft.access.VectorDataCollection
      - class ru.biosoft.access.DataCollectionUnion2 (implements ru.biosoft.access.CollectionUnion, ru.biosoft.access.DataCollectionListener)
      - class ru.biosoft.access.FileCollection
      - class ru.biosoft.access.LocalRepository (implements ru.biosoft.access.Repository)
  - class ru.biosoft.access.DataElementRef
  - class biouml.model.dynamics.EModelDiagramType (implements biouml.model.DiagramType)
  - class ru.biosoft.access.Entry
  - class ru.biosoft.access.FileDataElement
  - class biouml.modules.genenet.GeneNetDiagramType (implements biouml.model.DiagramType)
  - class biouml.modules.genenet.GeneNetModuleType (implements biouml.model.ModuleType)
  - class biouml.modules.kegg.KeggPathwayModuleType (implements biouml.model.ModuleType)
  - class biouml.standard.diagram.pathway.PathwayDiagramType (implements biouml.model.DiagramType)
    - class biouml.standard.diagram.pathway.GeneralizedPathwayDiagramType
    - class biouml.modules.kegg.KeggPathwayDiagramType
    - class biouml.standard.diagram.pathway.PathwaySimulationDiagramType
    - class biouml.modules.transpath.TranspathDiagramType
  - class biouml.standard.StandardModuleType (implements biouml.model.ModuleType)
  - class biouml.modules.transpath.TranspathModuleType (implements biouml.model.ModuleType)
- class biouml.model.DefaultDiagramViewBuilder (implements biouml.model.DiagramViewBuilder)
  - class biouml.model.dynamics.EModelDiagramViewBuilder
  - class biouml.standard.diagram.pathway.PathwayDiagramViewBuilder
    - class biouml.modules.genenet.GeneNetDiagramViewBuilder
    - class biouml.modules.kegg.KeggPathwayDiagramViewBuilder
    - class biouml.modules.transpath.TranspathDiagramViewBuilder
- class biouml.model.DefaultSemanticController (implements biouml.model.SemanticController)
- class ru.biosoft.graphics.editor.DefaultViewEditorHelper (implements ru.biosoft.graphics.editor.ViewEditorHelper)
- class biouml.editor.DiagramDocument (implements com.developmentontheedge.application.ApplicationDocument, PropertyChangeListener, TransactionListener)
- class biouml.editor.DiagramEditorHelper (implements TransactionListener, ru.biosoft.graphics.editor.ViewEditorHelper)
- class biouml.editor.DiagramFactory (implements com.developmentontheedge.application.DocumentFactory)
- class biouml.modules.genenet.access.DiagramFilter (implements ru.biosoft.access.Filter)
- class biouml.editor.DiagramListener (implements ru.biosoft.access.DataCollectionListener, PropertyChangeListener)
- class biouml.modules.kegg.type.access.DiagramReader
- class biouml.model.util.DiagramXMLReader
- class biouml.model.util.DiagramXMLWriter
- class com.developmentontheedge.application.DocumentManager
- class biouml.standard.type.EditionHistory (implements PropertyChangeListener)
- class biouml.standard.type.EditionHistory.Edition
- class biouml.model.dynamics.EModelDiagramViewOptions
- class ru.biosoft.access.support.EntryParser
- class biouml.standard.type.EnzymaticReaction (implements biouml.standard.type.ReactionType)
- class biouml.standard.type.Expression (implements biouml.standard.type.ReactionType)
- class ru.biosoft.util.FileChooserRegistry
- class ru.biosoft.access.Filter.IncludeAllFilter (implements ru.biosoft.access.Filter)
- class ru.biosoft.access.Filter.IncludeNoneFilter (implements ru.biosoft.access.Filter)
- class biouml.editor.FilteringSettings
- class biouml.editor.graphlayout.ForceDirectedLayoutManager (implements biouml.editor.graphlayout.IterativeGraphLayout)
  - class biouml.editor.graphlayout.CellLayoutManager
- class biouml.model.util.Framework
- class biouml.modules.genenet.GeneNetModuleActivator (implements biouml.model.util.ModuleActivator)
- class biouml.modules.genenet.GeneNetQueryEngine (implements biouml.model.QueryEngine)
- class ru.biosoft.graphics.GraphicProperties
- class ru.biosoft.graphics.encoders.ImageEncoder (implements ImageConsumer)
  - class ru.biosoft.graphics.encoders.GifEncoder
- class ru.biosoft.access.Index.IndexEntry
- class ru.biosoft.graphics.editor.InverseSelector (implements ru.biosoft.graphics.editor.ViewSelector)
- class biouml.editor.tool.JMatLinkFactory
- class biouml.editor.tool.JMatLinkJDK13 (implements biouml.editor.tool.JMatLinkInterface)
- class biouml.editor.tool.JMatLinkJDK14 (implements biouml.editor.tool.JMatLinkInterface)
- class com.developmentontheedge.jobcontrol.JobControlEvent
- class com.developmentontheedge.jobcontrol.JobControlListenerAdapter (implements com.developmentontheedge.jobcontrol.JobControlListener)
- class biouml.modules.kegg.KeggPathwayModuleActivator (implements biouml.model.util.ModuleActivator)
- class biouml.modules.kegg.KeggPathwayQueryEngine (implements biouml.model.QueryEngine)
- class com.developmentontheedge.print.LargePageable (implements Pageable)
  - class com.developmentontheedge.print.JPrintableComponent (implements Printable)
- class com.developmentontheedge.print.LargePageable.TranslatedPrintable (implements Printable)
- class biouml.editor.graphlayout.LayeredLayoutManager (implements biouml.editor.graphlayout.GraphLayout)
  - class biouml.editor.graphlayout.LayeredOptimizedLayoutManager (implements biouml.editor.graphlayout.GraphLayout)
    - class biouml.editor.graphlayout.StarLayoutManager
- class biouml.modules.genenet.access.MGL_Connection
  - class biouml.modules.genenet.access.MGL_Connection_Client
- class biouml.model.util.ModulePackager
- class biouml.editor.NodeInfo
- class java.lang.Object
  - class javax.swing.AbstractAction
    - class biouml.editor.AboutAction
    - class com.developmentontheedge.application.action.ApplicationAction
      - class com.developmentontheedge.application.action.ApplicationAction.ActionAboutDialog
      - class com.developmentontheedge.application.action.ApplicationAction.ActionExit
      - class com.developmentontheedge.application.action.ApplicationAction.ActionHelp
      - class com.developmentontheedge.application.action.ApplicationAction.ActionPrint
      - class com.developmentontheedge.application.action.ApplicationAction.ActionPrintPreview
      - class com.developmentontheedge.application.action.ApplicationAction.ActionPrintSetup
    - class biouml.editor.ApplyLayoutAction
    - class biouml.editor.CloseDiagramAction
    - class biouml.editor.module.ExportModuleAction
    - class biouml.model.htmlgen.GenerateHTMLAction
    - class ru.biosoft.graphics.editor.InsertAction
    - class com.developmentontheedge.jobcontrol.action.JobAction
    - class biouml.editor.module.ModuleSetupAction
    - class biouml.editor.NewDiagramAction
    - class biouml.editor.NewModuleAction
    - class biouml.editor.OpenDiagramAction
    - class biouml.editor.PreferencesAction
    - class com.developmentontheedge.print.PrintAction
    - class com.developmentontheedge.print.PrintPreviewAction
    - class com.developmentontheedge.print.PrintSetupAction
    - class biouml.editor.QueryFormAction
    - class biouml.editor.RedoAction
    - class biouml.editor.module.RemoveModuleAction
    - class biouml.editor.SaveAsDiagramAction
    - class biouml.editor.SaveAsImageAction
    - class biouml.editor.SaveDiagramAction
    - class biouml.editor.SearchFormAction
    - class biouml.editor.TogglePanelAction
    - class biouml.editor.UndoAction
    - class biouml.editor.ZoomInAction
    - class biouml.editor.ZoomOutAction
  - class javax.swing.AbstractListModel
    - class ru.biosoft.access.support.NameListToListModelAdapter (implements ru.biosoft.access.DataCollectionListener)
  - class java.util.AbstractMap
    - class ru.biosoft.access.BTreeIndex (implements ru.biosoft.access.Index)
    - class java.util.HashMap
      - class ru.biosoft.util.HashMapSoftValues
      - class ru.biosoft.util.HashMapWeakValues
      - class ru.biosoft.access.MemIndex (implements ru.biosoft.access.Index)
  - class javax.swing.undo.AbstractUndoableEdit
    - class biouml.editor.DataCollectionRemoveUndo
      - class biouml.editor.DataCollectionAddUndo
  - class org.apache.log4j.AppenderSkeleton
    - class biouml.editor.TextPaneAppender
  - class java.lang.ClassLoader
    - class java.security.SecureClassLoader
      - class java.net.URLClassLoader
        - class ru.biosoft.access.CollectionFactory.CollectionClassLoader
  - class java.awt.Component
    - class java.awt.Container
      - class javax.swing.JComponent
        - class javax.swing.AbstractButton
          - class javax.swing.JMenuItem
            - class javax.swing.JMenu
              - class com.developmentontheedge.application.ApplicationMenu
        - class ru.biosoft.graphics.font.FontChooser
        - class javax.swing.JMenuBar
          - class com.developmentontheedge.application.ApplicationMenuBar
        - class javax.swing.JPanel
          - class com.developmentontheedge.application.ApplicationStatusBar (implements ActionListener, com.developmentontheedge.jobcontrol.JobControlListener)
          - class ru.biosoft.access.support.DataCollectionMultyChoicePane
          - class biouml.editor.DiagramElementInfoPane
          - class biouml.editor.DiagramsPane (implements ChangeListener)
          - class com.developmentontheedge.jobcontrol.JobControlPane
          - class biouml.editor.ModelSettingsPane (implements PropertyChangeListener)
          - class com.developmentontheedge.application.NamedPanel
          - class com.developmentontheedge.print.PagePreview
          - class com.developmentontheedge.application.PanelManager (implements PropertyChangeListener)
          - class ru.biosoft.access.repository.RepositoryPane
          - class ru.biosoft.access.repository.RepositoryPane2
          - class biouml.editor.SearchLinkedPanel
          - class com.developmentontheedge.application.dialog.TextButtonField
            - class com.developmentontheedge.application.dialog.BrowseTextField
          - class ru.biosoft.graphics.editor.ViewPane (implements MouseListener, MouseMotionListener)
            - class ru.biosoft.graphics.editor.ViewEditorPane (implements KeyListener, Transactable)
        - class javax.swing.JPopupMenu
          - class com.developmentontheedge.application.ApplicationPopupMenu
        - class javax.swing.JProgressBar
          - class com.developmentontheedge.jobcontrol.JobProgressBar (implements com.developmentontheedge.jobcontrol.JobControlListener)
        - class javax.swing.JToolBar
          - class com.developmentontheedge.application.ApplicationToolBar
      - class java.awt.Window
        - class java.awt.Dialog
          - class javax.swing.JDialog
            - class biouml.editor.AboutDialog
            - class ru.biosoft.access.CreateDataCollectionDefaultController (implements ru.biosoft.access.CreateDataCollectionController)
            - class ru.biosoft.util.OkCancelDialog
              - class ru.biosoft.access.support.DataCollectionMultyChoiceDialog
              - class ru.biosoft.access.support.NewDataElementDialog
            - class com.developmentontheedge.application.dialog.OkCancelDialog
              - class biouml.editor.AskIDDialog
              - class biouml.editor.CreateReactionDialog (implements ru.biosoft.graphics.editor.ViewPaneListener)
              - class biouml.modules.genenet.GeneNetModuleSetupDialog
              - class biouml.model.htmlgen.GenerateHTMLDialog
              - class biouml.editor.MatlabErrorDialog
              - class biouml.editor.module.ModuleExportDialog
              - class biouml.editor.module.ModuleInfoDialog
              - class biouml.editor.module.ModuleReplaceDialog
              - class biouml.editor.module.ModulesActivatingDialog
              - class biouml.editor.NewDiagramDialog
              - class biouml.editor.NewDiagramElementDialog
              - class biouml.editor.module.StatusInfoDialog (implements com.developmentontheedge.jobcontrol.JobControlListener)
              - class biouml.modules.transpath.TranspathModuleSetupDialog
            - class biouml.editor.PreferencesDialog
            - class com.developmentontheedge.print.PreviewDialog
        - class java.awt.Frame
          - class javax.swing.JFrame
            - class com.developmentontheedge.application.ApplicationFrame
              - class biouml.editor.BioUMLApplication (implements ChangeListener)
                - class biouml.editor.BioUMLEditor
                  - class biouml.editor.BioUMLModeler
                - class biouml.editor.BioUMLViewer
            - class biouml.editor.QueryEngine (implements PropertyChangeListener)
            - class biouml.editor.SearchEngine (implements TransactionListener)
  - class java.util.Dictionary
    - class java.util.Hashtable
      - class ru.biosoft.access.IndexTable
      - class java.util.Properties
        - class ru.biosoft.util.ExProperties
        - class com.developmentontheedge.application.MapRegistry (implements com.developmentontheedge.application.ApplicationRegistry)
    - class ru.biosoft.graphics.encoders.IntHashtable (implements Cloneable)
  - class com.beanexplorer.beans.DynamicProperty
    - class ru.biosoft.access.support.DatabaseField
      - class ru.biosoft.access.support.StringField
  - class com.beanexplorer.beans.DynamicPropertySetSupport
    - class ru.biosoft.access.support.DatabaseEntry (implements ru.biosoft.access.MutableDataElement)
  - class java.util.EventObject
    - class java.awt.AWTEvent
      - class java.awt.event.ComponentEvent
        - class java.awt.event.InputEvent
          - class java.awt.event.MouseEvent
            - class ru.biosoft.graphics.editor.ViewPaneEvent
    - class ru.biosoft.access.DataCollectionEvent
  - class javax.swing.filechooser.FileFilter
    - class biouml.editor.module.BMDFileFilter
    - class biouml.modules.transpath.DatFileFilter
    - class biouml.model.htmlgen.XSLFileFilter
  - class com.beanexplorer.swing.table.Option
    - class ru.biosoft.graphics.Brush
    - class ru.biosoft.graphics.font.ColorFont
    - class biouml.model.DiagramViewOptions
      - class biouml.standard.diagram.pathway.PathwayDiagramViewOptions
        - class biouml.modules.genenet.GeneNetDiagramViewOptions
        - class biouml.modules.kegg.KeggPathwayDiagramViewOptions
        - class biouml.modules.transpath.TranspathDiagramViewOptions
    - class biouml.model.dynamics.EModelRoleSupport (implements biouml.model.dynamics.EModelRole)
      - class biouml.model.dynamics.EModel
        - class biouml.model.dynamics.MatlabOdeModel (implements ru.biosoft.access.DataCollectionListener)
      - class biouml.model.dynamics.Equation
      - class biouml.model.dynamics.Reaction
    - class biouml.standard.type.ImageDescriptor (implements ImageObserver)
    - class ru.biosoft.access.MutableDataElementSupport (implements ru.biosoft.access.MutableDataElement)
      - class biouml.standard.type.BaseSupport (implements biouml.standard.type.Base)
        - class biouml.standard.type.GenericEntity
          - class biouml.standard.type.Compartment
            - class biouml.modules.genenet.type.Compartment
          - class biouml.standard.type.Referrer
            - class biouml.standard.type.DiagramDescription
              - class biouml.modules.genenet.type.DiagramDescription
            - class biouml.standard.type.Molecule
              - class biouml.standard.type.Biopolimer
                - class biouml.standard.type.Gene
                  - class biouml.modules.genenet.type.Gene
                - class biouml.standard.type.Protein
                  - class biouml.modules.kegg.type.Enzyme
                  - class biouml.modules.genenet.type.Protein
                - class biouml.standard.type.RNA
                  - class biouml.modules.genenet.type.RNA
              - class biouml.standard.type.Cell
                - class biouml.modules.genenet.type.Cell
              - class biouml.modules.transpath.type.Molecule
              - class biouml.modules.genenet.type.Proces
              - class biouml.standard.type.Substance
                - class biouml.modules.kegg.type.Compound
                - class biouml.modules.genenet.type.Substance
            - class biouml.standard.type.Reaction
              - class biouml.modules.genenet.type.Reaction
              - class biouml.modules.transpath.type.Reaction
          - class biouml.standard.type.Relation (implements biouml.standard.type.RelationType)
      - class biouml.model.dynamics.Constant
      - class biouml.model.DiagramElement
        - class biouml.model.Edge
        - class biouml.model.Node
          - class biouml.model.Compartment (implements ru.biosoft.access.DataCollection)
            - class biouml.model.Diagram (implements PropertyChangeListener)
            - class biouml.model.EquivalentNodeGroup
      - class biouml.modules.genenet.type.Expert
      - class biouml.standard.type.LiteratureReference
      - class biouml.standard.type.Species
      - class biouml.model.dynamics.Variable (implements biouml.model.dynamics.EModelRole)
    - class ru.biosoft.access.MutableFilter (implements ru.biosoft.access.Filter)
      - class ru.biosoft.access.support.ArrayPropertyValueFilter
      - class biouml.standard.filter.BiopolimerDiagramFilter (implements biouml.model.DiagramFilter)
      - class ru.biosoft.access.CompositeFilter
        - class ru.biosoft.access.support.BeanValueFilter
        - class biouml.standard.filter.ValueListFilter
          - class biouml.standard.filter.BiopolimerDiagramFilter.CellTypeFilter
          - class biouml.standard.filter.BiopolimerDiagramFilter.InducerFilter
          - class biouml.standard.filter.BiopolimerDiagramFilter.SpeciesFilter
      - class ru.biosoft.access.PatternFilter
      - class ru.biosoft.access.support.PropertyValueFilter
      - class biouml.standard.filter.ValueListFilter.ValueFilter
    - class ru.biosoft.graphics.Pen
    - class ru.biosoft.graphics.RulerOptions
    - class biouml.editor.SearchOptions
    - class biouml.editor.ViewerDiagramFilter
  - class java.awt.print.PageFormat
    - class com.developmentontheedge.print.FooterFormat
  - class java.beans.PropertyEditorSupport
    - class com.beanexplorer.editors.CustomEditorSupport
      - class com.beanexplorer.editors.ColorEditor
        - class ru.biosoft.graphics.BrushEditor
      - class ru.biosoft.access.support.DataCollectionMultyChoicePropertyEditor
        - class biouml.standard.type.ReferrerBeanInfo.LiteratureReferencesEditor
      - class ru.biosoft.graphics.font.FontEditor
    - class biouml.modules.genenet.type.MultiLineHtmlFieldEditor
    - class biouml.standard.type.MultiLineHtmlFieldEditor
    - class com.beanexplorer.editors.StringTagEditorSupport
      - class biouml.editor.FilteringSettingsBeanInfo.ModuleEditor
      - class biouml.standard.type.ProteinBeanInfo.FunctionalStateEditor
      - class biouml.standard.type.ProteinBeanInfo.ModificationEditor
      - class biouml.standard.type.ProteinBeanInfo.StructureEditor
      - class biouml.standard.type.RNABeanInfo.RnaTypeEditor
    - class com.beanexplorer.editors.TagEditorSupport
      - class biouml.model.CompartmentBeanInfo.ShapeTypeEditor
      - class biouml.model.DiagramFilterActionEditor
      - class biouml.editor.FilteringSettingsBeanInfo.TypeEditor (implements PropertyEditorEx)
      - class biouml.editor.SearchOptionsBeanInfo.DirectionTypeEditor
      - class biouml.editor.SearchOptionsBeanInfo.TypeEditor (implements PropertyEditorEx)
        - class biouml.editor.SearchOptionsBeanInfo.DiagramTypeEditor
        - class biouml.editor.SearchOptionsBeanInfo.IdentifierEditor
        - class biouml.editor.SearchOptionsBeanInfo.LayoutTypeEditor
        - class biouml.editor.SearchOptionsBeanInfo.NodeTypeEditor
  - class java.util.ResourceBundle
    - class java.util.ListResourceBundle
      - class ru.biosoft.graphics.BrushMessageBundle
      - class ru.biosoft.graphics.font.ColorFontMessageBundle
      - class ru.biosoft.access.LocalRepositoryMessageBundle
      - class biouml.modules.genenet.MessageBundle
      - class biouml.modules.kegg.type.MessageBundle
      - class biouml.modules.genenet.type.MessageBundle
      - class biouml.modules.transpath.type.MessageBundle
      - class ru.biosoft.access.support.MessageBundle
      - class biouml.standard.filter.MessageBundle
      - class biouml.model.MessageBundle
      - class biouml.modules.transpath.MessageBundle
      - class biouml.standard.type.MessageBundle
      - class biouml.model.dynamics.resources.MessageBundle
      - class biouml.modules.kegg.MessageBundle
      - class biouml.standard.diagram.pathway.MessageBundle
      - class biouml.editor.resources.MessageBundle
      - class biouml.model.util.MessageBundle
      - class biouml.model.ModuleMessageBundle
      - class ru.biosoft.graphics.PenMessageBundle
      - class ru.biosoft.graphics.RulerOptionsMessageBundle
      - class ru.biosoft.access.TransformedDataCollectionMessageBundle
      - class ru.biosoft.access.VectorDataCollectionMessageBundle
  - class java.beans.SimpleBeanInfo
    - class com.beanexplorer.beans.BeanInfoEx
      - class ru.biosoft.access.support.ArrayPropertyValueFilterBeanInfo
      - class ru.biosoft.access.support.BeanValueFilterBeanInfo
      - class biouml.standard.filter.BiopolimerDiagramFilterBeanInfo
      - class ru.biosoft.graphics.BrushBeanInfo
      - class ru.biosoft.graphics.font.ColorFontBeanInfo
      - class biouml.model.dynamics.ConstantBeanInfo
      - class biouml.model.DiagramElementBeanInfo
        - class biouml.model.CompartmentBeanInfo
        - class biouml.model.DiagramBeanInfo
        - class biouml.model.EdgeBeanInfo
        - class biouml.model.EquivalentNodeGroupBeanInfo
        - class biouml.model.NodeBeanInfo
      - class biouml.model.DiagramViewOptionsBeanInfo
      - class biouml.model.dynamics.EquationBeanInfo
      - class biouml.editor.FilteringSettingsBeanInfo
      - class biouml.modules.genenet.GeneNetDiagramTypeBeanInfo
      - class biouml.standard.diagram.pathway.GeneralizedPathwayDiagramTypeBeanInfo
      - class biouml.standard.type.GenericEntityBeanInfo
        - class biouml.standard.type.CompartmentBeanInfo
          - class biouml.modules.genenet.type.CompartmentBeanInfo
        - class biouml.standard.type.ReferrerBeanInfo
          - class biouml.standard.type.MoleculeBeanInfo
            - class biouml.standard.type.BiopolimerBeanInfo
              - class biouml.standard.type.GeneBeanInfo
                - class biouml.modules.genenet.type.GeneBeanInfo
              - class biouml.standard.type.ProteinBeanInfo
                - class biouml.modules.genenet.type.ProteinBeanInfo
              - class biouml.standard.type.RNABeanInfo
                - class biouml.modules.genenet.type.RNABeanInfo
            - class biouml.standard.type.CellBeanInfo
              - class biouml.modules.genenet.type.CellBeanInfo
            - class biouml.modules.transpath.type.MoleculeBeanInfo
            - class biouml.modules.genenet.type.ProcesBeanInfo
            - class biouml.standard.type.SubstanceBeanInfo
              - class biouml.modules.genenet.type.SubstanceBeanInfo
          - class biouml.standard.type.ReactionBeanInfo
            - class biouml.modules.genenet.type.ReactionBeanInfo
        - class biouml.standard.type.RelationBeanInfo
      - class biouml.standard.type.ImageDescriptorBeanInfo
      - class biouml.modules.kegg.KeggPathwayDiagramTypeBeanInfo
      - class biouml.standard.type.LiteratureReferenceBeanInfo
      - class ru.biosoft.access.LocalRepositoryBeanInfo
      - class biouml.model.dynamics.MatlabOdeModelBeanInfo
      - class biouml.model.ModuleBeanInfo
      - class biouml.editor.NodeInfoBeanInfo
      - class biouml.standard.diagram.pathway.PathwayDiagramTypeBeanInfo
      - class biouml.standard.diagram.pathway.PathwaySimulationDiagramTypeBeanInfo
      - class ru.biosoft.graphics.PenBeanInfo
      - class biouml.editor.PreferencesBeanInfo
      - class ru.biosoft.access.support.PropertyValueFilterBeanInfo
      - class biouml.modules.transpath.type.ReactionBeanInfo
      - class ru.biosoft.graphics.RulerOptionsBeanInfo
      - class biouml.editor.SearchOptionsBeanInfo
      - class ru.biosoft.access.TransformedDataCollectionBeanInfo
      - class biouml.modules.transpath.TranspathDiagramTypeBeanInfo
      - class biouml.standard.filter.ValueListFilter.ValueFilterBeanInfo
      - class biouml.standard.filter.ValueListFilterBeanInfo
        - class biouml.standard.filter.BiopolimerDiagramFilter.CellTypeFilterBeanInfo
        - class biouml.standard.filter.BiopolimerDiagramFilter.InducerFilterBeanInfo
        - class biouml.standard.filter.BiopolimerDiagramFilter.SpeciesFilterBeanInfo
      - class biouml.model.dynamics.VariableBeanInfo
      - class ru.biosoft.access.VectorDataCollectionBeanInfo
      - class biouml.editor.ViewerDiagramFilterBeanInfo
  - class java.lang.Thread
    - class JMatLink
  - class java.lang.Throwable
    - class java.lang.Exception
      - class ru.biosoft.access.DataCollectionVetoException
      - class com.developmentontheedge.jobcontrol.JobControlException
      - class java.lang.RuntimeException
        - class ru.biosoft.util.ChainRuntimeException
- class com.developmentontheedge.application.PanelInfo
- class biouml.standard.diagram.pathway.PathwaySemanticController (implements biouml.model.SemanticController)
  - class biouml.modules.genenet.GeneNetSemanticController
  - class biouml.modules.kegg.KeggPathwaySemanticController
  - class biouml.modules.transpath.TranspathSemanticController
- class biouml.editor.Preferences (implements com.developmentontheedge.application.ApplicationRegistry, Cloneable)
- class com.developmentontheedge.print.PrintManager
- class ru.biosoft.access.support.PropertyValueFilterBeanInfo.FilterPropertyEditor (implements PropertyEditorEx)
- class ru.biosoft.access.support.SetPropertyCommand (implements ru.biosoft.access.support.TagCommand)
  - class ru.biosoft.access.support.SetArrayPropertyCommand
  - class biouml.modules.kegg.type.access.SetPropertyCommand
- class biouml.standard.StandardModuleActivator (implements biouml.model.util.ModuleActivator)
- class biouml.standard.StandardQueryEngine (implements biouml.model.QueryEngine)
- class ru.biosoft.util.TextUtil
- class biouml.modules.transpath.TranspathModuleActivator (implements biouml.model.util.ModuleActivator)
- class biouml.modules.transpath.TranspathQueryEngine (implements biouml.model.QueryEngine)
- class biouml.standard.type.Transport (implements biouml.standard.type.ReactionType)
- class ru.biosoft.graphics.View
  - class ru.biosoft.graphics.CompositeView
    - class ru.biosoft.graphics.ArrowView
    - class ru.biosoft.graphics.Ruler
  - class ru.biosoft.graphics.ImageView (implements ImageObserver)
  - class ru.biosoft.graphics.LineView
  - class ru.biosoft.graphics.ShapeView
    - class ru.biosoft.graphics.BoxView
    - class ru.biosoft.graphics.EllipseView
    - class ru.biosoft.graphics.PolygonView
      - class ru.biosoft.graphics.PolylineView
  - class ru.biosoft.graphics.TextView
- class ru.biosoft.graphics.editor.ViewPaneAdapter (implements ru.biosoft.graphics.editor.ViewPaneListener)
  - class ru.biosoft.graphics.editor.SelectionManager
    - class ru.biosoft.graphics.editor.MultipleSelectionManager
      - class ru.biosoft.graphics.editor.ResizableSelectionManager

## Interface Hierarchy

- interface com.developmentontheedge.application.ApplicationDocument
- interface com.developmentontheedge.application.ApplicationRegistry
- interface ru.biosoft.access.CreateDataCollectionController
- interface ru.biosoft.access.DataElement
  - interface biouml.standard.type.Base (also extends biouml.standard.type.Type)
  - interface ru.biosoft.access.DataCollection
    - interface ru.biosoft.access.CollectionUnion
  - interface biouml.model.DiagramType
  - interface biouml.model.ModuleType
  - interface ru.biosoft.access.MutableDataElement
- interface biouml.model.DiagramViewBuilder
- interface com.developmentontheedge.application.DocumentFactory
- interface java.util.EventListener
  - interface ru.biosoft.access.DataCollectionListener
- interface ru.biosoft.access.Filter
  - interface biouml.model.DiagramFilter
- interface biouml.editor.graphlayout.GraphLayout
  - interface biouml.editor.graphlayout.IterativeGraphLayout
- interface biouml.editor.tool.JMatLinkInterface
- interface com.developmentontheedge.jobcontrol.JobControlListener
- interface java.util.Map
  - interface ru.biosoft.access.Index
- interface biouml.model.util.ModuleActivator
- interface biouml.standard.type.ProteinProperties
- interface biouml.model.QueryEngine
- interface ru.biosoft.access.QuerySystem
- interface biouml.standard.type.ReactionType
- interface biouml.standard.type.RelationType
- interface ru.biosoft.access.Repository
- interface ru.biosoft.access.repository.RepositoryListener
- interface biouml.model.Role
  - interface biouml.model.dynamics.EModelRole
- interface java.lang.Runnable
  - interface com.developmentontheedge.jobcontrol.JobControl
- interface biouml.model.SemanticController
- interface biouml.standard.type.SpeciesSpecific
- interface ru.biosoft.access.SQLTransformer
- interface ru.biosoft.access.support.TagCommand
- interface ru.biosoft.access.Transformer
- interface biouml.standard.type.Type
  - interface biouml.standard.type.Base (also extends ru.biosoft.access.DataElement)
- interface ru.biosoft.graphics.editor.ViewEditorHelper
- interface ru.biosoft.graphics.editor.ViewPaneListener
- interface ru.biosoft.graphics.editor.ViewSelector

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