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## Uses of Class
biouml.standard.type.Base

Packages that use Base
biouml.model |
biouml.modules.genenet |
biouml.modules.kegg |
biouml.modules.transpath |
biouml.standard |
biouml.standard.diagram.pathway |
biouml.standard.type |

Uses of Base in biouml.model

Constructors in biouml.model with parameters of type Base
`Compartment.Compartment(DataCollection parent, Base kernel)`
`Compartment.Compartment(DataCollection parent, String id, Base kernel)`
`Diagram.Diagram(DataCollection origin, Base kernel, DiagramType type)` Creates the diagram of the specified type.
`DiagramElement.DiagramElement(DataCollection parent, Base kernel)` Constructs the diagram element.
`DiagramElement.DiagramElement(DataCollection parent, String name, Base kernel)` Constructs the diagram element.
`Edge.Edge(DataCollection parent, Base kernel, Node input, Node output)`
`Edge.Edge(DataCollection parent, String id, Base kernel, Node input, Node output)`
`Node.Node(DataCollection parent, Base kernel)`
`Node.Node(DataCollection parent, String name, Base kernel)`

Methods in biouml.model that return Base
`Base` | `DiagramElement.getKernel()`
`Base[]` | `EquivalentNodeGroup.getKernels()` We would like to get access for kernels through the property to display it in property inspector.
`Base[]` | `QueryEngine.searchKernel(Class aClass, String name, boolean isRegexp)`

Methods in biouml.model with parameters of type Base
`DiagramElement` | `DefaultSemanticController.createDiagramElement(Base kernel, Set elements)`
`void` | `Diagram.setKernel(Base newKernel)`
`void` | `DiagramElement.setKernel(Base kernel)`
`DiagramElement` | `SemanticController.createDiagramElement(Base kernel, Set elements)`

Uses of Base in biouml.modules.genenet

Methods in biouml.modules.genenet that return Base
`Base[]` | `GeneNetQueryEngine.searchKernel(Class aClass, String name, boolean isRegexp)`

Methods in biouml.modules.genenet with parameters of type Base
`DiagramElement` | `GeneNetSemanticController.createDiagramElement(Base kernel, Set elements)`

Uses of Base in biouml.modules.kegg

Methods in biouml.modules.kegg that return Base
`Base[]` | `KeggPathwayQueryEngine.searchKernel(Class aClass, String name, boolean isRegexp)`

Methods in biouml.modules.kegg with parameters of type Base
`DiagramElement` | `KeggPathwaySemanticController.createDiagramElement(Base kernel, Set elements)`

Uses of Base in biouml.modules.transpath

Methods in biouml.modules.transpath that return Base
`Base[]` | `TranspathQueryEngine.searchKernel(Class aClass, String name, boolean isRegexp)`

Methods in biouml.modules.transpath with parameters of type Base
`DiagramElement` | `TranspathSemanticController.createDiagramElement(Base kernel, Set elements)`

Uses of Base in biouml.standard

Methods in biouml.standard that return Base
`Base[]` | `StandardQueryEngine.searchKernel(Class aClass, String name, boolean isRegexp)`

Uses of Base in biouml.standard.diagram.pathway

Methods in biouml.standard.diagram.pathway with parameters of type Base
`boolean` | `PathwayDiagramViewBuilder.isReaction(Base kernel)`
`DiagramElement` | `PathwaySemanticController.createDiagramElement(Base kernel, Set elements)`

Uses of Base in biouml.standard.type

Classes in biouml.standard.type that implement Base
`class` | `BaseSupport` Base class for all data element types.

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