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## Uses of Class
biouml.model.Node

Packages that use Node
biouml.editor |
biouml.editor.graphlayout |
biouml.model |
biouml.model.dynamics |
biouml.modules.genenet |
biouml.modules.kegg |
biouml.modules.transpath |
biouml.standard |
biouml.standard.diagram.pathway |

Uses of Node in biouml.editor

Constructors in biouml.editor with parameters of type Node
`NodeInfo.NodeInfo(Node initNode)`

Methods in biouml.editor that return Node
`Node` | `NewDiagramElementDialog.getNode()`
`Node` | `NodeInfo.getNode()`

Methods in biouml.editor with parameters of type Node
`static boolean` | `DiagramEditorHelper.moveNode(Node newNode, Node oldNode)`
`static void` | `DiagramEditorHelper.removeMovedNode(Node node)`
`void` | `SearchLinkedPanel.setLinkedNodes(Node[] linkedNodes)`
`void` | `SearchLinkedPanel.setSelectedNode(Node selectedNode)`
`void` | `SearchLinkedPanel.showLinkedNodes(Node[] nodes)`

Uses of Node in biouml.editor.graphlayout

Methods in biouml.editor.graphlayout with parameters of type Node
`void` | `CellLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)`
`void` | `ForceDirectedLayoutManager.layout(Diagram diagram, Node center, Node selectedNode)`
`void` | `ForceDirectedLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)`
`void` | `GraphLayout.layout(Diagram diagram, Node center, Node selectedNode)`
`void` | `GraphLayout.layout(Diagram diagram, Node center, Node[] nodes, Node selectedNode)`
`void` | `LayeredLayoutManager.layout(Diagram diagram, Node center, Node selectedNode)`
`void` | `LayeredLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)`
`void` | `LayeredOptimizedLayoutManager.layout(Diagram diagram, Node center, Node selectedNode)`
`void` | `LayeredOptimizedLayoutManager.layout(Diagram diagram, Node root, Node[] addedNodes, Node selectedNode)`

Uses of Node in biouml.model

Subclasses of Node in biouml.model
`class` | `Compartment` General definition of the compartment as a container for nodes and edges between them.

Constructors in biouml.model with parameters of type Node
`Edge.Edge(DataCollection parent, Base kernel, Node input, Node output)`
`Edge.Edge(DataCollection parent, String id, Base kernel, Node input, Node output)`

Methods in biouml.model that return Node
`Node` | `Compartment.findNode(String id)`
`Node` | `Edge.getInput()`
`Node` | `Edge.getOutput()`
`Node` | `EquivalentNodeGroup.getRepresentative()`
`Node[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Methods in biouml.model with parameters of type Node
`CompositeView` | `DefaultDiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)`
`void` | `DefaultDiagramViewBuilder.highlightNode(Node node, Filter filter, Brush brush)`
`void` | `DefaultDiagramViewBuilder.moveNode(Node node, Point newLocation)`
`CompositeView` | `DiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)`
`void` | `DiagramViewBuilder.moveNode(Node node, Point newLocation)`
`Node[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `QueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Uses of Node in biouml.model.dynamics

Methods in biouml.model.dynamics with parameters of type Node
`CompositeView` | `EModelDiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)`

Uses of Node in biouml.modules.genenet

Methods in biouml.modules.genenet that return Node
`Node[]` | `GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Methods in biouml.modules.genenet with parameters of type Node
`Node[]` | `GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `GeneNetQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Uses of Node in biouml.modules.kegg

Methods in biouml.modules.kegg that return Node
`Node[]` | `KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Methods in biouml.modules.kegg with parameters of type Node
`Node[]` | `KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `KeggPathwayQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Uses of Node in biouml.modules.transpath

Methods in biouml.modules.transpath that return Node
`Node[]` | `TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Methods in biouml.modules.transpath with parameters of type Node
`Node[]` | `TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `TranspathQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Uses of Node in biouml.standard

Methods in biouml.standard that return Node
`Node[]` | `StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Methods in biouml.standard with parameters of type Node
`Node[]` | `StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller, Set elements)`
`Node[]` | `StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, SemanticController controller)`
`Node[]` | `StandardQueryEngine.searchLinked(Diagram diagram, Node node, int direction, int depth, SemanticController controller)`

Uses of Node in biouml.standard.diagram.pathway

Methods in biouml.standard.diagram.pathway with parameters of type Node
`CompositeView` | `PathwayDiagramViewBuilder.createNodeView(Node node, DiagramViewOptions options, Graphics g)`

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