BioUML - open source Java framework for systems biology

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COMBINE-2010 annual meeting: COmputational Modeling in BIology NEtwork These are supplementary materials for COMBINE 2010 meeting, October 6-9, 2010, Edinburgh, Scotland. Encoding and exchanging graphical representation: architecture and formats   Slides (MS Power Point, 1.1 MB)   Graphic notation DTD DTD for XML document that defines graphic notation   SBGN: definition as an XML documents SBGN PD.xml - defintion of SBGN PD diagram type SBGN ER.xml - defintion of SBGN ER diagram type description (MS Word, 2.8 Mb) how SBGN specification for each node type is mapped to corresponding part of XML document and treated by BioUML workbench   SBGN info initial ideas: http://sbgn.org/LibSbgnMeeting090409 DTD for SBGN info Examples: SBML diagram in SBGN notation corresponding XML document TRANSPATH diagram in SBGN notation

Version 0.9.3 BioUML workbench version 0.9.3 (alpha) was released at October 31, 2010. More...   SBML tests passed 100% BioUML version 0.9.0 have passed all tests from SBML test suite version 2.0 (SBML L1v2, L2v1-4, L3v1) Test details.   Have questions? If you have any questions please contact us at info@Biosoft.Ru

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