Test: BIOMD0000000024.xml - Ok


test: BIOMD0000000024.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000024.gif


Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL6618241436.png


Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables:
Simulators: BioUML  ByoDyn  Oscill8 Core  edu.kgi.roadRunner  jsim 
timesimulation P M
var error var error
0.0 BioUML1,00000E01,00E171,00000E01,00E17
0.0 ByoDyn1,00000E-15100,01,00000E-15100,0
0.0 Oscill8 Core1,00000E-15100,01,00000E-15100,0
0.0 edu.kgi.roadRunner1,00000E01,00E171,00000E01,00E17
0.0 jsim1,00000E-15100,01,00000E-15100,0
0.2 BioUML9,58870E-19,59E161,05887E0441
0.2 ByoDyn9,58869E-16100,01,95861E-181,3
0.2 Oscill8 Core1,00000E-15100,01,20000E-15100,0
0.2 edu.kgi.roadRunner1,17063E01,17E171,04904E0436
0.2 jsim1,00000E-15100,01,20000E-15100,0
0.4 BioUML9,19431E-19,19E161,11942E0192
0.4 ByoDyn9,19430E-16100,03,83666E-164,5
0.4 Oscill8 Core1,00000E-15100,01,40000E-15100,0
0.4 edu.kgi.roadRunner1,36019E01,36E171,08135E0182
0.4 jsim1,00000E-15100,01,40000E-15100,0
0.6 BioUML8,81614E-18,82E161,18156E0110
0.6 ByoDyn8,81614E-16100,05,63743E-148,7
0.6 Oscill8 Core1,00000E-15100,01,60000E-15100,0
0.6 edu.kgi.roadRunner1,55900E01,56E171,09954E095,0
0.6 jsim1,00000E-15100,01,60000E-15100,0
0.8 BioUML8,45353E-18,45E161,24520E069,1
0.8 ByoDyn8,45353E-16100,07,36412E-133,5
0.8 Oscill8 Core1,00000E-15100,01,80000E-15100,0
0.8 edu.kgi.roadRunner1,75834E01,76E171,10657E050,3
0.8 jsim1,00000E-15100,01,80000E-15100,0
1.0 BioUML8,10584E-18,11E161,31021E045,3
1.0 ByoDyn8,10584E-16100,09,01980E-118,4
1.0 Oscill8 Core1,00000E-15100,02,00000E-15100,0
1.0 edu.kgi.roadRunner1,95133E01,95E171,10517E022,5
1.0 jsim1,00000E-15100,02,00000E-15100,0
1.2 BioUML7,77245E-17,77E161,37649E029,8
1.2 ByoDyn7,77245E-16100,01,06074E03,4
1.2 Oscill8 Core1,00000E-15100,02,20000E-15100,0
1.2 edu.kgi.roadRunner2,13304E02,13E171,09759E03,5
1.2 jsim1,00000E-15100,02,20000E-15100,0
1.4 BioUML7,45277E-17,45E161,44391E033,0
1.4 ByoDyn7,45277E-16100,01,21297E011,7
1.4 Oscill8 Core1,00000E-15100,02,40000E-15100,0
1.4 edu.kgi.roadRunner2,30024E02,30E171,08555E010,5
1.4 jsim1,00000E-15100,02,40000E-15100,0
1.6 BioUML7,14620E-17,15E161,51228E041,3
1.6 ByoDyn7,14624E-16100,01,35893E027,0
1.6 Oscill8 Core1,00000E-15100,02,60000E-15100,0
1.6 edu.kgi.roadRunner2,45108E02,45E171,07036E021,2
1.6 jsim1,00000E-15100,02,60000E-15100,0
1.8 BioUML6,85127E-16,85E161,58022E050,1
1.8 ByoDyn6,85232E-16100,01,49890E042,3
1.8 Oscill8 Core1,00000E-15100,02,80000E-15100,0
1.8 edu.kgi.roadRunner2,58472E02,58E171,05300E029,7
1.8 jsim1,00000E-15100,02,80000E-15100,0
2.0 BioUML6,56732E-16,57E161,64738E059,3
2.0 ByoDyn6,57048E-16100,01,63310E057,9
2.0 Oscill8 Core1,00000E-15100,03,00000E-15100,0
2.0 edu.kgi.roadRunner2,70106E02,70E171,03420E036,7
2.0 jsim1,00000E-15100,03,00000E-15100,0
2.2 BioUML6,29420E-16,29E161,71411E069,0
2.2 ByoDyn6,30024E-16100,01,76179E073,7
2.2 Oscill8 Core1,00000E-15100,03,20000E-15100,0
2.2 edu.kgi.roadRunner2,80049E02,80E171,01450E040,8
2.2 jsim1,00000E-15100,03,20000E-15100,0
2.4 BioUML6,03174E-16,03E161,78073E079,1
2.4 ByoDyn6,04111E-16100,01,88519E089,6
2.4 Oscill8 Core1,00000E-15100,03,40000E-15100,0
2.4 edu.kgi.roadRunner2,88377E02,88E179,94334E-144,2
2.4 jsim1,00000E-15100,03,40000E-15100,0
2.6 BioUML5,77976E-15,78E161,84750E089,7
2.6 ByoDyn5,79263E-16100,02,00351E0106
2.6 Oscill8 Core1,00000E-15100,03,60000E-15100,0
2.6 edu.kgi.roadRunner2,95184E02,95E179,74008E-147,3
2.6 jsim1,00000E-15100,03,60000E-15100,0
2.8 BioUML5,53804E-15,54E161,91466E0101
2.8 ByoDyn5,55438E-16100,02,11696E0122
2.8 Oscill8 Core1,00000E-15100,03,80000E-15100,0
2.8 edu.kgi.roadRunner3,00580E03,01E179,53769E-150,2
2.8 jsim1,00000E-15100,03,80000E-15100,0
3.0 BioUML5,30635E-15,31E161,98239E0112
3.0 ByoDyn5,32593E-16100,02,22575E0138
3.0 Oscill8 Core1,00000E-15100,04,00000E-15100,0
3.0 edu.kgi.roadRunner3,04679E03,05E179,33808E-152,9
3.0 jsim1,00000E-15100,04,00000E-15100,0
3.2 BioUML5,08444E-15,08E162,05086E0124
3.2 ByoDyn5,10687E-16100,02,33006E0155
3.2 Oscill8 Core1,00000E-15100,04,20000E-15100,0
3.2 edu.kgi.roadRunner3,07597E03,08E179,14272E-155,4
3.2 jsim1,00000E-15100,04,20000E-15100,0
3.4 BioUML4,87205E-14,87E162,12018E0137
3.4 ByoDyn4,89683E-16100,02,43008E0171
3.4 Oscill8 Core1,00000E-15100,04,40000E-15100,0
3.4 edu.kgi.roadRunner3,09448E03,09E178,95278E-157,8
3.4 jsim1,00000E-15100,04,40000E-15100,0
3.6 BioUML4,66889E-14,67E162,19042E0150
3.6 ByoDyn4,69542E-16100,02,52599E0188
3.6 Oscill8 Core1,00000E-15100,04,60000E-15100,0
3.6 edu.kgi.roadRunner3,10342E03,10E178,76918E-160,0
3.6 jsim1,00000E-15100,04,60000E-15100,0
3.8 BioUML4,47466E-14,47E162,26163E0163
3.8 ByoDyn4,50229E-16100,02,61796E0205
3.8 Oscill8 Core1,00000E-15100,04,80000E-15100,0
3.8 edu.kgi.roadRunner3,10386E03,10E178,59263E-162,0
3.8 jsim1,00000E-15100,04,80000E-15100,0
4.0 BioUML4,28906E-14,29E162,33380E0177
4.0 ByoDyn4,31711E-16100,02,70614E0221
4.0 Oscill8 Core1,00000E-15100,05,00000E-15100,0
4.0 edu.kgi.roadRunner3,09679E03,10E178,42372E-163,9
4.0 jsim1,00000E-15100,05,00000E-15100,0
4.2 BioUML4,11177E-14,11E162,40690E0191
4.2 ByoDyn4,13955E-16100,02,79069E0238
4.2 Oscill8 Core1,00000E-15100,05,20000E-15100,0
4.2 edu.kgi.roadRunner3,08313E03,08E178,26289E-165,7
4.2 jsim1,00000E-15100,05,20000E-15100,0
4.4 BioUML3,94246E-13,94E162,48085E0206
4.4 ByoDyn3,96928E-16100,02,87177E0254
4.4 Oscill8 Core1,00000E-15100,05,40000E-15100,0
4.4 edu.kgi.roadRunner3,06374E03,06E178,11049E-167,3
4.4 jsim1,00000E-15100,05,40000E-15100,0
4.6 BioUML3,78080E-12,95E32,55555E0221
4.6 ByoDyn1,23888E-296,72,94950E0270
4.6 Oscill8 Core1,00000E-15100,05,60000E-15100,0
4.6 edu.kgi.roadRunner3,03943E02,44E47,96680E-168,8
4.6 jsim1,00000E-15100,05,60000E-15100,0
4.8 BioUML3,62645E-16112,63085E0236
4.8 ByoDyn5,10398E-285,93,02385E0286
4.8 Oscill8 Core1,00000E-15100,05,80000E-15100,0
4.8 edu.kgi.roadRunner3,01093E05,80E37,83203E-170,2
4.8 jsim1,00000E-15100,05,80000E-15100,0
5.0 BioUML3,47908E-11632,70657E0251
5.0 ByoDyn1,32064E-162,03,09374E0301
5.0 Oscill8 Core1,00000E-15100,06,00000E-15100,0
5.0 edu.kgi.roadRunner2,97890E02,16E37,70634E-171,5
5.0 jsim1,00000E-15100,06,00000E-15100,0
5.2 BioUML3,33832E-120,42,78250E0267
5.2 ByoDyn2,77204E-117,03,15458E0316
5.2 Oscill8 Core1,00000E-15100,06,20000E-15100,0
5.2 edu.kgi.roadRunner2,94396E09627,58984E-172,7
5.2 jsim1,00000E-15100,06,20000E-15100,0
5.4 BioUML3,20386E-137,32,85838E0282
5.4 ByoDyn5,10756E-159,43,19482E0327
5.4 Oscill8 Core1,00000E-15100,06,40000E-15100,0
5.4 edu.kgi.roadRunner2,90667E08077,48260E-173,8
5.4 jsim1,00000E-15100,06,40000E-15100,0
5.6 BioUML3,07533E-163,92,93393E0297
5.6 ByoDyn8,51986E-11773,19853E0333
5.6 Oscill8 Core1,00000E-15100,06,60000E-15100,0
5.6 edu.kgi.roadRunner2,86754E08327,38465E-174,8
5.6 jsim1,00000E-15100,06,60000E-15100,0
5.8 BioUML2,95240E-177,73,00882E0312
5.8 ByoDyn1,32569E03493,15839E0333
5.8 Oscill8 Core1,00000E-15100,06,80000E-15100,0
5.8 edu.kgi.roadRunner2,82703E08587,29599E-175,8
5.8 jsim1,00000E-15100,06,80000E-15100,0
6.0 BioUML2,83474E-185,53,08272E0327
6.0 ByoDyn1,95064E05883,08308E0327
6.0 Oscill8 Core1,00000E-15100,07,00000E-15100,0
6.0 edu.kgi.roadRunner2,78555E08837,21661E-176,6
6.0 jsim1,00000E-15100,07,00000E-15100,0
6.2 BioUML2,72201E-190,13,15522E0342
6.2 ByoDyn2,74560E09092,98720E0318
6.2 Oscill8 Core1,00000E-15100,07,20000E-15100,0
6.2 edu.kgi.roadRunner2,74349E09087,14643E-176,1
6.2 jsim1,00000E-15100,07,20000E-15100,0
6.4 BioUML2,61391E-190,33,22590E0355
6.4 ByoDyn3,72618E01,33E32,88185E0307
6.4 Oscill8 Core1,00000E-15100,07,40000E-15100,0
6.4 edu.kgi.roadRunner2,70120E09337,08538E-175,4
6.4 jsim1,00000E-15100,07,40000E-15100,0
6.6 BioUML2,51011E-190,63,29432E0368
6.6 ByoDyn4,91064E01,86E32,77352E0294
6.6 Oscill8 Core1,00000E-15100,07,60000E-15100,0
6.6 edu.kgi.roadRunner2,65897E09597,03335E-174,6
6.6 jsim1,00000E-15100,07,60000E-15100,0
6.8 BioUML2,41033E-190,83,35999E0381
6.8 ByoDyn6,31257E02,52E32,66559E0281
6.8 Oscill8 Core1,00000E-15100,07,80000E-15100,0
6.8 edu.kgi.roadRunner2,61710E09866,99018E-173,8
6.8 jsim1,00000E-15100,07,80000E-15100,0
7.0 BioUML2,31428E-191,03,42240E0392
7.0 ByoDyn7,93730E03,33E32,55980E0268
7.0 Oscill8 Core1,00000E-15100,08,00000E-15100,0
7.0 edu.kgi.roadRunner2,57584E01,01E36,95571E-172,8
7.0 jsim1,00000E-15100,08,00000E-15100,0
7.2 BioUML2,22168E-191,23,48098E0402
7.2 ByoDyn7,93730E03,47E32,55980E0269
7.2 Oscill8 Core1,00000E-15100,08,20000E-15100,0
7.2 edu.kgi.roadRunner2,53542E01,04E36,92974E-172,9
7.2 jsim1,00000E-15100,08,20000E-15100,0
7.4 BioUML2,13228E-191,53,53516E0411
7.4 ByoDyn7,93730E03,62E32,55980E0270
7.4 Oscill8 Core1,00000E-15100,08,40000E-15100,0
7.4 edu.kgi.roadRunner2,49604E01,07E36,91201E-173,0
7.4 jsim1,00000E-15100,08,40000E-15100,0
7.6 BioUML2,04585E-191,73,58434E0419
7.6 ByoDyn7,93730E03,78E32,55980E0271
7.6 Oscill8 Core1,00000E-15100,08,60000E-15100,0
7.6 edu.kgi.roadRunner2,45790E01,10E36,90226E-173,0
7.6 jsim1,00000E-15100,08,60000E-15100,0
7.8 BioUML1,96218E-191,93,62787E0426
7.8 ByoDyn7,93730E03,95E32,55980E0271
7.8 Oscill8 Core1,00000E-15100,08,80000E-15100,0
7.8 edu.kgi.roadRunner2,42117E01,13E36,90019E-173,0
7.8 jsim1,00000E-15100,08,80000E-15100,0
8.0 BioUML1,88147E-192,13,66754E0431
8.0 ByoDyn7,93730E04,12E32,55980E0271
8.0 Oscill8 Core1,00000E-15100,09,00000E-15100,0
8.0 edu.kgi.roadRunner2,38599E01,17E36,90544E-173,0
8.0 jsim1,00000E-15100,09,00000E-15100,0
8.2 BioUML1,80408E-192,33,70612E0436
8.2 ByoDyn7,93730E04,30E32,55980E0270
8.2 Oscill8 Core1,00000E-15100,09,20000E-15100,0
8.2 edu.kgi.roadRunner2,35250E01,20E36,91764E-173,0
8.2 jsim1,00000E-15100,09,20000E-15100,0
8.4 BioUML1,72987E-192,53,74361E0440
8.4 ByoDyn7,93730E04,49E32,55980E0269
8.4 Oscill8 Core1,00000E-15100,09,40000E-15100,0
8.4 edu.kgi.roadRunner2,32083E01,24E36,93637E-172,9
8.4 jsim1,00000E-15100,09,40000E-15100,0
8.6 BioUML1,65871E-192,83,78003E0443
8.6 ByoDyn7,93730E04,69E32,55980E0268
8.6 Oscill8 Core1,00000E-15100,09,60000E-15100,0
8.6 edu.kgi.roadRunner2,29108E01,28E36,96118E-172,8
8.6 jsim1,00000E-15100,09,60000E-15100,0
8.8 BioUML1,59049E-193,03,81539E0446
8.8 ByoDyn7,93730E04,89E32,55980E0266
8.8 Oscill8 Core1,00000E-15100,09,80000E-15100,0
8.8 edu.kgi.roadRunner2,26334E01,32E36,99157E-172,7
8.8 jsim1,00000E-15100,09,80000E-15100,0
9.0 BioUML1,52508E-193,23,84968E0448
9.0 ByoDyn7,93730E05,10E32,55980E0264
9.0 Oscill8 Core1,00000E-15100,01,00000E-14100,0
9.0 edu.kgi.roadRunner2,23768E01,37E37,02701E-172,5
9.0 jsim1,00000E-15100,01,00000E-14100,0
9.2 BioUML1,46236E-193,43,88293E0449
9.2 ByoDyn7,93730E05,33E32,55980E0262
9.2 Oscill8 Core1,00000E-15100,01,02000E-14100,0
9.2 edu.kgi.roadRunner2,21418E01,41E37,06697E-172,4
9.2 jsim1,00000E-15100,01,02000E-14100,0
9.4 BioUML1,40222E-193,63,91515E0451
9.4 ByoDyn7,93730E05,56E32,55980E0260
9.4 Oscill8 Core1,00000E-15100,01,04000E-14100,0
9.4 edu.kgi.roadRunner2,19288E01,46E37,11086E-172,2
9.4 jsim1,00000E-15100,01,04000E-14100,0
9.6 BioUML1,34455E-193,83,94636E0451
9.6 ByoDyn7,93730E05,80E32,55980E0258
9.6 Oscill8 Core1,00000E-15100,01,06000E-14100,0
9.6 edu.kgi.roadRunner2,17381E01,52E37,15808E-172,0
9.6 jsim1,00000E-15100,01,06000E-14100,0
9.8 BioUML1,28925E-194,03,97656E0452
9.8 ByoDyn7,93730E06,06E32,55980E0255
9.8 Oscill8 Core1,00000E-15100,01,08000E-14100,0
9.8 edu.kgi.roadRunner2,15699E01,57E37,20801E-171,8
9.8 jsim1,00000E-15100,01,08000E-14100,0