Test: BIOMD0000000119.xml - Ok


test: BIOMD0000000119.xml
model: xml, reaction graph
plots: plot
comparison: comparison of simulators

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000119.gif


Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL1580005336.png


Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Ca 
Simulators: BioUML  ByoDyn  MathSBML  Oscill8 Core  SBToolbox2  SBWOdeSolver  copasi  edu.kgi.roadRunner 
timesimulation Ca
var error
0.0 BioUML7,87000E-40,00
0.0 ByoDyn7,87000E-40,00
0.0 MathSBML7,87000E-40,00
0.0 Oscill8 Core7,87000E-40,00
0.0 SBToolbox27,87000E-40,00
0.0 SBWOdeSolver7,87000E-40,00
0.0 copasi7,87000E-40,00
0.0 edu.kgi.roadRunner7,87000E-40,00
0.2 BioUML7,75910E-40,00
0.2 ByoDyn7,75910E-40,00
0.2 MathSBML7,75910E-40,00
0.2 Oscill8 Core7,74985E-40,12
0.2 SBToolbox27,75911E-40,00
0.2 SBWOdeSolver7,75910E-40,00
0.2 copasi7,75910E-40,00
0.2 edu.kgi.roadRunner7,75910E-40,00
0.4 BioUML7,64995E-40,00
0.4 ByoDyn7,64995E-40,00
0.4 MathSBML7,64995E-40,00
0.4 Oscill8 Core7,63154E-40,24
0.4 SBToolbox27,64992E-40,00
0.4 SBWOdeSolver7,64995E-40,00
0.4 copasi7,64995E-40,00
0.4 edu.kgi.roadRunner7,64995E-40,00
0.6 BioUML7,54258E-40,00
0.6 ByoDyn7,54258E-40,00
0.6 MathSBML7,54258E-40,00
0.6 Oscill8 Core7,51503E-40,37
0.6 SBToolbox27,54262E-40,00
0.6 SBWOdeSolver7,54258E-40,00
0.6 copasi7,54258E-40,00
0.6 edu.kgi.roadRunner7,54258E-40,00
0.8 BioUML7,43701E-40,00
0.8 ByoDyn7,43701E-40,00
0.8 MathSBML7,43701E-40,00
0.8 Oscill8 Core7,40029E-40,49
0.8 SBToolbox27,43702E-40,00
0.8 SBWOdeSolver7,43701E-40,00
0.8 copasi7,43701E-40,00
0.8 edu.kgi.roadRunner7,43701E-40,00
1.0 BioUML7,33325E-40,00
1.0 ByoDyn7,33325E-40,00
1.0 MathSBML7,33325E-40,00
1.0 Oscill8 Core7,28732E-40,63
1.0 SBToolbox27,33322E-40,00
1.0 SBWOdeSolver7,33325E-40,00
1.0 copasi7,33325E-40,00
1.0 edu.kgi.roadRunner7,33325E-40,00
1.2 BioUML7,23130E-40,00
1.2 ByoDyn7,23130E-40,00
1.2 MathSBML7,23130E-40,00
1.2 Oscill8 Core7,17606E-40,76
1.2 SBToolbox27,23130E-40,00
1.2 SBWOdeSolver7,23130E-40,00
1.2 copasi7,23130E-40,00
1.2 edu.kgi.roadRunner7,23130E-40,00
1.4 BioUML7,13118E-40,00
1.4 ByoDyn7,13118E-40,00
1.4 MathSBML7,13118E-40,00
1.4 Oscill8 Core7,06650E-40,91
1.4 SBToolbox27,13119E-40,00
1.4 SBWOdeSolver7,13118E-40,00
1.4 copasi7,13118E-40,00
1.4 edu.kgi.roadRunner7,13118E-40,00
1.6 BioUML7,03288E-40,00
1.6 ByoDyn7,03288E-40,00
1.6 MathSBML7,03288E-40,00
1.6 Oscill8 Core6,95862E-41,1
1.6 SBToolbox27,03287E-40,00
1.6 SBWOdeSolver7,03288E-40,00
1.6 copasi7,03288E-40,00
1.6 edu.kgi.roadRunner7,03288E-40,00
1.8 BioUML6,93640E-40,00
1.8 ByoDyn6,93640E-40,00
1.8 MathSBML6,93640E-40,00
1.8 Oscill8 Core6,85238E-41,2
1.8 SBToolbox26,93636E-40,00
1.8 SBWOdeSolver6,93640E-40,00
1.8 copasi6,93640E-40,00
1.8 edu.kgi.roadRunner6,93640E-40,00
2.0 BioUML6,84172E-40,00
2.0 ByoDyn6,84172E-40,00
2.0 MathSBML6,84172E-40,00
2.0 Oscill8 Core6,74777E-41,4
2.0 SBToolbox26,84164E-40,00
2.0 SBWOdeSolver6,84172E-40,00
2.0 copasi6,84172E-40,00
2.0 edu.kgi.roadRunner6,84172E-40,00
2.2 BioUML6,74884E-40,00
2.2 ByoDyn6,74884E-40,00
2.2 MathSBML6,74885E-40,00
2.2 Oscill8 Core6,64475E-41,5
2.2 SBToolbox26,74881E-40,00
2.2 SBWOdeSolver6,74884E-40,00
2.2 copasi6,74884E-40,00
2.2 edu.kgi.roadRunner6,74884E-40,00
2.4 BioUML6,65776E-40,00
2.4 ByoDyn6,65776E-40,00
2.4 MathSBML6,65776E-40,00
2.4 Oscill8 Core6,54331E-41,7
2.4 SBToolbox26,65768E-40,00
2.4 SBWOdeSolver6,65776E-40,00
2.4 copasi6,65776E-40,00
2.4 edu.kgi.roadRunner6,65776E-40,00
2.6 BioUML6,56846E-40,00
2.6 ByoDyn6,56846E-40,00
2.6 MathSBML6,56846E-40,00
2.6 Oscill8 Core6,44341E-41,9
2.6 SBToolbox26,56834E-40,00
2.6 SBWOdeSolver6,56846E-40,00
2.6 copasi6,56846E-40,00
2.6 edu.kgi.roadRunner6,56846E-40,00
2.8 BioUML6,48092E-40,00
2.8 ByoDyn6,48092E-40,00
2.8 MathSBML6,48092E-40,00
2.8 Oscill8 Core6,34504E-42,1
2.8 SBToolbox26,48080E-40,00
2.8 SBWOdeSolver6,48092E-40,00
2.8 copasi6,48092E-40,00
2.8 edu.kgi.roadRunner6,48092E-40,00
3.0 BioUML6,39514E-40,00
3.0 ByoDyn6,39514E-40,00
3.0 MathSBML6,39514E-40,00
3.0 Oscill8 Core6,24817E-42,3
3.0 SBToolbox26,39496E-40,00
3.0 SBWOdeSolver6,39514E-40,00
3.0 copasi6,39514E-40,00
3.0 edu.kgi.roadRunner6,39514E-40,00
3.2 BioUML6,31110E-40,00
3.2 ByoDyn6,31110E-40,00
3.2 MathSBML6,31110E-40,00
3.2 Oscill8 Core6,15278E-42,5
3.2 SBToolbox26,31091E-40,00
3.2 SBWOdeSolver6,31110E-40,00
3.2 copasi6,31110E-40,00
3.2 edu.kgi.roadRunner6,31110E-40,00
3.4 BioUML6,22879E-40,00
3.4 ByoDyn6,22879E-40,00
3.4 MathSBML6,22879E-40,00
3.4 Oscill8 Core6,05885E-42,7
3.4 SBToolbox26,22859E-40,00
3.4 SBWOdeSolver6,22879E-40,00
3.4 copasi6,22879E-40,00
3.4 edu.kgi.roadRunner6,22879E-40,00
3.6 BioUML6,14819E-40,00
3.6 ByoDyn6,14819E-40,00
3.6 MathSBML6,14819E-40,00
3.6 Oscill8 Core5,96635E-43,0
3.6 SBToolbox26,14794E-40,00
3.6 SBWOdeSolver6,14819E-40,00
3.6 copasi6,14819E-40,00
3.6 edu.kgi.roadRunner6,14819E-40,00
3.8 BioUML6,06930E-40,00
3.8 ByoDyn6,06930E-40,00
3.8 MathSBML6,06930E-40,00
3.8 Oscill8 Core5,87526E-43,2
3.8 SBToolbox26,06898E-40,00
3.8 SBWOdeSolver6,06930E-40,00
3.8 copasi6,06930E-40,00
3.8 edu.kgi.roadRunner6,06930E-40,00
4.0 BioUML5,99209E-40,00
4.0 ByoDyn5,99209E-40,00
4.0 MathSBML5,99209E-40,00
4.0 Oscill8 Core5,78556E-43,4
4.0 SBToolbox25,99172E-40,00
4.0 SBWOdeSolver5,99209E-40,00
4.0 copasi5,99209E-40,00
4.0 edu.kgi.roadRunner5,99209E-40,00
4.2 BioUML5,91655E-40,00
4.2 ByoDyn5,91655E-40,00
4.2 MathSBML5,91655E-40,00
4.2 Oscill8 Core5,69724E-43,7
4.2 SBToolbox25,91620E-40,00
4.2 SBWOdeSolver5,91655E-40,00
4.2 copasi5,91655E-40,00
4.2 edu.kgi.roadRunner5,91655E-40,00
4.4 BioUML5,84266E-40,00
4.4 ByoDyn5,84266E-40,00
4.4 MathSBML5,84266E-40,00
4.4 Oscill8 Core5,61026E-44,0
4.4 SBToolbox25,84228E-40,00
4.4 SBWOdeSolver5,84266E-40,00
4.4 copasi5,84266E-40,00
4.4 edu.kgi.roadRunner5,84266E-40,00
4.6 BioUML5,77042E-40,00
4.6 ByoDyn5,77042E-40,00
4.6 MathSBML5,77042E-40,00
4.6 Oscill8 Core5,52461E-44,3
4.6 SBToolbox25,77001E-40,00
4.6 SBWOdeSolver5,77042E-40,00
4.6 copasi5,77042E-40,00
4.6 edu.kgi.roadRunner5,77042E-40,00
4.8 BioUML5,69981E-40,00
4.8 ByoDyn5,69981E-40,00
4.8 MathSBML5,69981E-40,00
4.8 Oscill8 Core5,44026E-44,5
4.8 SBToolbox25,69938E-40,00
4.8 SBWOdeSolver5,69981E-40,00
4.8 copasi5,69981E-40,00
4.8 edu.kgi.roadRunner5,69981E-40,00
5.0 BioUML5,63081E-40,00
5.0 ByoDyn5,63081E-40,00
5.0 MathSBML5,63081E-40,00
5.0 Oscill8 Core5,35721E-44,9
5.0 SBToolbox25,63030E-40,00
5.0 SBWOdeSolver5,63081E-40,00
5.0 copasi5,63081E-40,00
5.0 edu.kgi.roadRunner5,63081E-40,00
5.2 BioUML5,56341E-40,00
5.2 ByoDyn5,56341E-40,00
5.2 MathSBML5,56341E-40,00
5.2 Oscill8 Core5,27542E-45,2
5.2 SBToolbox25,56292E-40,00
5.2 SBWOdeSolver5,56341E-40,00
5.2 copasi5,56341E-40,00
5.2 edu.kgi.roadRunner5,56341E-40,00
5.4 BioUML5,49760E-40,00
5.4 ByoDyn5,49760E-40,00
5.4 MathSBML5,49760E-40,00
5.4 Oscill8 Core5,19488E-45,5
5.4 SBToolbox25,49708E-40,00
5.4 SBWOdeSolver5,49760E-40,00
5.4 copasi5,49760E-40,00
5.4 edu.kgi.roadRunner5,49760E-40,00
5.6 BioUML5,43335E-40,00
5.6 ByoDyn5,43335E-40,00
5.6 MathSBML5,43336E-40,00
5.6 Oscill8 Core5,11557E-45,8
5.6 SBToolbox25,43279E-40,00
5.6 SBWOdeSolver5,43336E-40,00
5.6 copasi5,43335E-40,00
5.6 edu.kgi.roadRunner5,43335E-40,00
5.8 BioUML5,37067E-40,00
5.8 ByoDyn5,37067E-40,00
5.8 MathSBML5,37067E-40,00
5.8 Oscill8 Core5,03747E-46,2
5.8 SBToolbox25,37000E-40,00
5.8 SBWOdeSolver5,37067E-40,00
5.8 copasi5,37067E-40,00
5.8 edu.kgi.roadRunner5,37067E-40,00
6.0 BioUML5,30952E-40,00
6.0 ByoDyn5,30952E-40,00
6.0 MathSBML5,30952E-40,00
6.0 Oscill8 Core4,96057E-46,6
6.0 SBToolbox25,30886E-40,00
6.0 SBWOdeSolver5,30952E-40,00
6.0 copasi5,30952E-40,00
6.0 edu.kgi.roadRunner5,30952E-40,00
6.2 BioUML5,24991E-40,00
6.2 ByoDyn5,24991E-40,00
6.2 MathSBML5,24991E-40,00
6.2 Oscill8 Core4,88483E-46,9
6.2 SBToolbox25,24920E-40,00
6.2 SBWOdeSolver5,24991E-40,00
6.2 copasi5,24991E-40,00
6.2 edu.kgi.roadRunner5,24991E-40,00
6.4 BioUML5,19181E-40,00
6.4 ByoDyn5,19181E-40,00
6.4 MathSBML5,19181E-40,00
6.4 Oscill8 Core4,81026E-47,3
6.4 SBToolbox25,19109E-40,00
6.4 SBWOdeSolver5,19181E-40,00
6.4 copasi5,19181E-40,00
6.4 edu.kgi.roadRunner5,19181E-40,00
6.6 BioUML5,13522E-40,00
6.6 ByoDyn5,13522E-40,00
6.6 MathSBML5,13522E-40,00
6.6 Oscill8 Core4,73682E-47,7
6.6 SBToolbox25,13445E-40,00
6.6 SBWOdeSolver5,13522E-40,00
6.6 copasi5,13522E-40,00
6.6 edu.kgi.roadRunner5,13522E-40,00
6.8 BioUML5,08011E-40,00
6.8 ByoDyn5,08011E-40,00
6.8 MathSBML5,08011E-40,00
6.8 Oscill8 Core4,66450E-48,2
6.8 SBToolbox25,07930E-40,00
6.8 SBWOdeSolver5,08011E-40,00
6.8 copasi5,08011E-40,00
6.8 edu.kgi.roadRunner5,08011E-40,00
7.0 BioUML5,02648E-40,00
7.0 ByoDyn5,02648E-40,00
7.0 MathSBML5,02648E-40,00
7.0 Oscill8 Core4,59329E-48,6
7.0 SBToolbox25,02562E-40,00
7.0 SBWOdeSolver5,02648E-40,00
7.0 copasi5,02648E-40,00
7.0 edu.kgi.roadRunner5,02648E-40,00
7.2 BioUML4,97432E-40,00
7.2 ByoDyn4,97432E-40,00
7.2 MathSBML4,97432E-40,00
7.2 Oscill8 Core4,52317E-49,1
7.2 SBToolbox24,97347E-40,00
7.2 SBWOdeSolver4,97432E-40,00
7.2 copasi4,97432E-40,00
7.2 edu.kgi.roadRunner4,97432E-40,00
7.4 BioUML4,92360E-40,00
7.4 ByoDyn4,92360E-40,00
7.4 MathSBML4,92360E-40,00
7.4 Oscill8 Core4,45411E-49,5
7.4 SBToolbox24,92275E-40,00
7.4 SBWOdeSolver4,92360E-40,00
7.4 copasi4,92360E-40,00
7.4 edu.kgi.roadRunner4,92360E-40,00
7.6 BioUML4,87433E-40,00
7.6 ByoDyn4,87433E-40,00
7.6 MathSBML4,87433E-40,00
7.6 Oscill8 Core4,38611E-410,0
7.6 SBToolbox24,87340E-40,00
7.6 SBWOdeSolver4,87433E-40,00
7.6 copasi4,87433E-40,00
7.6 edu.kgi.roadRunner4,87433E-40,00
7.8 BioUML4,82648E-40,00
7.8 ByoDyn4,82648E-40,00
7.8 MathSBML4,82648E-40,00
7.8 Oscill8 Core4,31915E-410,5
7.8 SBToolbox24,82549E-40,00
7.8 SBWOdeSolver4,82648E-40,00
7.8 copasi4,82648E-40,00
7.8 edu.kgi.roadRunner4,82648E-40,00
8.0 BioUML4,78004E-40,00
8.0 ByoDyn4,78004E-40,00
8.0 MathSBML4,78004E-40,00
8.0 Oscill8 Core4,25321E-411,0
8.0 SBToolbox24,77904E-40,00
8.0 SBWOdeSolver4,78004E-40,00
8.0 copasi4,78004E-40,00
8.0 edu.kgi.roadRunner4,78004E-40,00
8.2 BioUML4,73501E-40,00
8.2 ByoDyn4,73501E-40,00
8.2 MathSBML4,73501E-40,00
8.2 Oscill8 Core4,18828E-411,5
8.2 SBToolbox24,73400E-40,00
8.2 SBWOdeSolver4,73501E-40,00
8.2 copasi4,73501E-40,00
8.2 edu.kgi.roadRunner4,73501E-40,00
8.4 BioUML4,69137E-40,00
8.4 ByoDyn4,69137E-40,00
8.4 MathSBML4,69137E-40,00
8.4 Oscill8 Core4,12433E-412,1
8.4 SBToolbox24,69035E-40,00
8.4 SBWOdeSolver4,69137E-40,00
8.4 copasi4,69137E-40,00
8.4 edu.kgi.roadRunner4,69137E-40,00
8.6 BioUML4,64910E-40,00
8.6 ByoDyn4,64910E-40,00
8.6 MathSBML4,64910E-40,00
8.6 Oscill8 Core4,06137E-412,6
8.6 SBToolbox24,64801E-40,00
8.6 SBWOdeSolver4,64910E-40,00
8.6 copasi4,64910E-40,00
8.6 edu.kgi.roadRunner4,64910E-40,00
8.8 BioUML4,60821E-40,00
8.8 ByoDyn4,60821E-40,00
8.8 MathSBML4,60821E-40,00
8.8 Oscill8 Core3,99936E-413,2
8.8 SBToolbox24,60706E-40,00
8.8 SBWOdeSolver4,60821E-40,00
8.8 copasi4,60821E-40,00
8.8 edu.kgi.roadRunner4,60821E-40,00
9.0 BioUML4,56867E-40,00
9.0 ByoDyn4,56867E-40,00
9.0 MathSBML4,56867E-40,00
9.0 Oscill8 Core3,93831E-413,8
9.0 SBToolbox24,56751E-40,00
9.0 SBWOdeSolver4,56867E-40,00
9.0 copasi4,56867E-40,00
9.0 edu.kgi.roadRunner4,56867E-40,00
9.2 BioUML4,53048E-40,00
9.2 ByoDyn4,53048E-40,00
9.2 MathSBML4,53048E-40,00
9.2 Oscill8 Core3,87818E-414,4
9.2 SBToolbox24,52935E-40,00
9.2 SBWOdeSolver4,53048E-40,00
9.2 copasi4,53048E-40,00
9.2 edu.kgi.roadRunner4,53048E-40,00
9.4 BioUML4,49362E-40,00
9.4 ByoDyn4,49362E-40,00
9.4 MathSBML4,49362E-40,00
9.4 Oscill8 Core3,81897E-415,0
9.4 SBToolbox24,49239E-40,00
9.4 SBWOdeSolver4,49362E-40,00
9.4 copasi4,49362E-40,00
9.4 edu.kgi.roadRunner4,49362E-40,00
9.6 BioUML4,45809E-40,00
9.6 ByoDyn4,45809E-40,00
9.6 MathSBML4,45809E-40,00
9.6 Oscill8 Core3,76067E-415,6
9.6 SBToolbox24,45683E-40,00
9.6 SBWOdeSolver4,45809E-40,00
9.6 copasi4,45809E-40,00
9.6 edu.kgi.roadRunner4,45809E-40,00
9.8 BioUML4,42386E-40,00
9.8 ByoDyn4,42387E-40,00
9.8 MathSBML4,42387E-40,00
9.8 Oscill8 Core3,70325E-416,3
9.8 SBToolbox24,42257E-40,00
9.8 SBWOdeSolver4,42387E-40,00
9.8 copasi4,42387E-40,00
9.8 edu.kgi.roadRunner4,42387E-40,00
Max relative error16,3