/* * This code is generated by BioUML FrameWork * for BIOMD0000000014.xml diagram at 2008.03.20 15:03:52 */ import biouml.plugins.simulation.ae.NewtonSolver; import biouml.plugins.simulation.java.JavaBaseModel; import ru.biosoft.math.MathRoutines; public class BIOMD0000000014 extends JavaBaseModel { /* * Write rules to calculate equation parameters */ /* * Write rules to calculate equation parameters excluding internal variables. */ public void __internalRateVarInitFunc_0(double time, double[] x) { rate_Reaction1 = Reaction1_a1*x[20]*x[6]; rate_Reaction10 = Reaction10_a4*x[19]*x[4]; rate_Reaction100 = Reaction100_kpoff*x[52]; rate_Reaction101 = Reaction101_kpon*x[2]*x[81]; rate_Reaction102 = Reaction102_kpoff*x[53]; rate_Reaction103 = Reaction103_kon*x[3]*x[85]; rate_Reaction104 = Reaction104_koff*x[76]; rate_Reaction105 = Reaction105_kon*x[3]*x[83]; rate_Reaction106 = Reaction106_koff*x[74]; rate_Reaction107 = Reaction107_kon*x[3]*x[84]; rate_Reaction108 = Reaction108_koff*x[75]; rate_Reaction109 = Reaction109_kpon*x[4]*x[85]; rate_Reaction11 = Reaction11_d4*x[14]; rate_Reaction110 = Reaction110_kpoff*x[79]; rate_Reaction111 = Reaction111_kpon*x[4]*x[83]; rate_Reaction112 = Reaction112_kpoff*x[77]; rate_Reaction113 = Reaction113_kpon*x[4]*x[84]; rate_Reaction114 = Reaction114_kpoff*x[78]; rate_Reaction115 = Reaction115_kpon*x[5]*x[85]; rate_Reaction116 = Reaction116_kpoff*x[82]; rate_Reaction117 = Reaction117_kpon*x[5]*x[83]; rate_Reaction118 = Reaction118_kpoff*x[80]; rate_Reaction119 = Reaction119_kpon*x[5]*x[84]; rate_Reaction12 = Reaction12_k4*x[14]; rate_Reaction120 = Reaction120_kpoff*x[81]; rate_Reaction121 = Reaction121_kon*x[3]*x[33]; rate_Reaction122 = Reaction122_koff*x[24]; rate_Reaction123 = Reaction123_kon*x[3]*x[31]; rate_Reaction124 = Reaction124_koff*x[22]; rate_Reaction125 = Reaction125_kon*x[3]*x[32]; rate_Reaction126 = Reaction126_koff*x[23]; rate_Reaction127 = Reaction127_kpon*x[4]*x[33]; rate_Reaction128 = Reaction128_kpoff*x[27]; rate_Reaction129 = Reaction129_kpon*x[4]*x[31]; rate_Reaction13 = Reaction13_a5*x[4]*x[7]; rate_Reaction130 = Reaction130_kpoff*x[25]; rate_Reaction131 = Reaction131_kpon*x[4]*x[32]; rate_Reaction132 = Reaction132_kpoff*x[26]; rate_Reaction133 = Reaction133_kpon*x[5]*x[33]; rate_Reaction134 = Reaction134_kpoff*x[30]; } public void __internalRateVarInitFunc_1(double time, double[] x) { rate_Reaction135 = Reaction135_kpon*x[5]*x[31]; rate_Reaction136 = Reaction136_kpoff*x[28]; rate_Reaction137 = Reaction137_kpon*x[5]*x[32]; rate_Reaction138 = Reaction138_kpoff*x[29]; rate_Reaction139 = Reaction139_kon*x[3]*x[45]; rate_Reaction14 = Reaction14_d5*x[11]; rate_Reaction140 = Reaction140_koff*x[36]; rate_Reaction141 = Reaction141_kon*x[3]*x[43]; rate_Reaction142 = Reaction142_koff*x[34]; rate_Reaction143 = Reaction143_kon*x[3]*x[44]; rate_Reaction144 = Reaction144_koff*x[35]; rate_Reaction145 = Reaction145_kpon*x[4]*x[45]; rate_Reaction146 = Reaction146_kpoff*x[39]; rate_Reaction147 = Reaction147_kpon*x[4]*x[43]; rate_Reaction148 = Reaction148_kpoff*x[37]; rate_Reaction149 = Reaction149_kpon*x[4]*x[44]; rate_Reaction15 = Reaction15_k5*x[11]; rate_Reaction150 = Reaction150_kpoff*x[38]; rate_Reaction151 = Reaction151_kpon*x[5]*x[45]; rate_Reaction152 = Reaction152_kpoff*x[42]; rate_Reaction153 = Reaction153_kpon*x[5]*x[43]; rate_Reaction154 = Reaction154_kpoff*x[40]; rate_Reaction155 = Reaction155_kpon*x[5]*x[44]; rate_Reaction156 = Reaction156_kpoff*x[41]; rate_Reaction157 = Reaction157_kon*x[3]*x[57]; rate_Reaction158 = Reaction158_koff*x[48]; rate_Reaction159 = Reaction159_kon*x[3]*x[55]; rate_Reaction16 = Reaction16_a6*x[19]*x[5]; rate_Reaction160 = Reaction160_koff*x[46]; rate_Reaction161 = Reaction161_kon*x[3]*x[56]; rate_Reaction162 = Reaction162_koff*x[47]; rate_Reaction163 = Reaction163_kpon*x[4]*x[57]; rate_Reaction164 = Reaction164_kpoff*x[51]; rate_Reaction165 = Reaction165_kpon*x[4]*x[55]; rate_Reaction166 = Reaction166_kpoff*x[49]; rate_Reaction167 = Reaction167_kpon*x[4]*x[56]; rate_Reaction168 = Reaction168_kpoff*x[50]; rate_Reaction169 = Reaction169_kpon*x[5]*x[57]; rate_Reaction17 = Reaction17_d6*x[15]; rate_Reaction170 = Reaction170_kpoff*x[54]; } public void __internalRateVarInitFunc_2(double time, double[] x) { rate_Reaction171 = Reaction171_kpon*x[5]*x[55]; rate_Reaction172 = Reaction172_kpoff*x[52]; rate_Reaction173 = Reaction173_kpon*x[5]*x[56]; rate_Reaction174 = Reaction174_kpoff*x[53]; rate_Reaction175 = Reaction175_kon*x[6]*x[85]; rate_Reaction176 = Reaction176_koff*x[83]; rate_Reaction177 = Reaction177_kpon*x[7]*x[85]; rate_Reaction178 = Reaction178_kpoff*x[84]; rate_Reaction179 = Reaction179_kon*x[6]*x[76]; rate_Reaction18 = Reaction18_k6*x[15]; rate_Reaction180 = Reaction180_koff*x[74]; rate_Reaction181 = Reaction181_kpon*x[7]*x[76]; rate_Reaction182 = Reaction182_kpoff*x[75]; rate_Reaction183 = Reaction183_kon*x[6]*x[79]; rate_Reaction184 = Reaction184_koff*x[77]; rate_Reaction185 = Reaction185_kpon*x[7]*x[79]; rate_Reaction186 = Reaction186_kpoff*x[78]; rate_Reaction187 = Reaction187_kon*x[6]*x[82]; rate_Reaction188 = Reaction188_koff*x[80]; rate_Reaction189 = Reaction189_kpon*x[7]*x[82]; rate_Reaction19 = Reaction19_a7*x[0]*x[5]; rate_Reaction190 = Reaction190_kpoff*x[81]; rate_Reaction191 = Reaction191_kon*x[6]*x[33]; rate_Reaction192 = Reaction192_koff*x[31]; rate_Reaction193 = Reaction193_kpon*x[7]*x[33]; rate_Reaction194 = Reaction194_kpoff*x[32]; rate_Reaction195 = Reaction195_kon*x[6]*x[24]; rate_Reaction196 = Reaction196_koff*x[22]; rate_Reaction197 = Reaction197_kpon*x[7]*x[24]; rate_Reaction198 = Reaction198_kpoff*x[23]; rate_Reaction199 = Reaction199_kon*x[6]*x[27]; rate_Reaction2 = Reaction2_d1*x[16]; rate_Reaction20 = Reaction20_d7*x[8]; rate_Reaction200 = Reaction200_koff*x[25]; rate_Reaction201 = Reaction201_kpon*x[7]*x[27]; rate_Reaction202 = Reaction202_kpoff*x[26]; rate_Reaction203 = Reaction203_kon*x[6]*x[30]; rate_Reaction204 = Reaction204_koff*x[28]; rate_Reaction205 = Reaction205_kpon*x[7]*x[30]; rate_Reaction206 = Reaction206_kpoff*x[29]; } public void __internalRateVarInitFunc_3(double time, double[] x) { rate_Reaction207 = Reaction207_kon*x[6]*x[45]; rate_Reaction208 = Reaction208_koff*x[43]; rate_Reaction209 = Reaction209_kpon*x[7]*x[45]; rate_Reaction21 = Reaction21_k7*x[8]; rate_Reaction210 = Reaction210_kpoff*x[44]; rate_Reaction211 = Reaction211_kon*x[6]*x[36]; rate_Reaction212 = Reaction212_koff*x[34]; rate_Reaction213 = Reaction213_kpon*x[7]*x[36]; rate_Reaction214 = Reaction214_kpoff*x[35]; rate_Reaction215 = Reaction215_kon*x[6]*x[39]; rate_Reaction216 = Reaction216_koff*x[37]; rate_Reaction217 = Reaction217_kpon*x[7]*x[39]; rate_Reaction218 = Reaction218_kpoff*x[38]; rate_Reaction219 = Reaction219_kon*x[6]*x[42]; rate_Reaction22 = Reaction22_a8*x[18]*x[1]; rate_Reaction220 = Reaction220_koff*x[40]; rate_Reaction221 = Reaction221_kpon*x[7]*x[42]; rate_Reaction222 = Reaction222_kpoff*x[41]; rate_Reaction223 = Reaction223_kon*x[6]*x[57]; rate_Reaction224 = Reaction224_koff*x[55]; rate_Reaction225 = Reaction225_kpon*x[7]*x[57]; rate_Reaction226 = Reaction226_kpoff*x[56]; rate_Reaction227 = Reaction227_kon*x[6]*x[48]; rate_Reaction228 = Reaction228_koff*x[46]; rate_Reaction229 = Reaction229_kpon*x[7]*x[48]; rate_Reaction23 = Reaction23_d8*x[12]; rate_Reaction230 = Reaction230_kpoff*x[47]; rate_Reaction231 = Reaction231_kon*x[6]*x[51]; rate_Reaction232 = Reaction232_koff*x[49]; rate_Reaction233 = Reaction233_kpon*x[7]*x[51]; rate_Reaction234 = Reaction234_kpoff*x[50]; rate_Reaction235 = Reaction235_kon*x[6]*x[54]; rate_Reaction236 = Reaction236_koff*x[52]; rate_Reaction237 = Reaction237_kpon*x[7]*x[54]; rate_Reaction238 = Reaction238_kpoff*x[53]; rate_Reaction239 = Reaction239_k7*x[30]; rate_Reaction24 = Reaction24_k8*x[12]; rate_Reaction240 = Reaction240_k7*x[28]; rate_Reaction241 = Reaction241_k7*x[29]; rate_Reaction242 = Reaction242_k9a*x[42]; } public void __internalRateVarInitFunc_4(double time, double[] x) { rate_Reaction243 = Reaction243_k9a*x[40]; rate_Reaction244 = Reaction244_k9a*x[41]; rate_Reaction245 = Reaction245_k3*x[75]; rate_Reaction246 = Reaction246_k5a*x[78]; rate_Reaction247 = Reaction247_k3*x[23]; rate_Reaction248 = Reaction248_k5a*x[26]; rate_Reaction249 = Reaction249_k3*x[35]; rate_Reaction25 = Reaction25_a9*x[1]*x[5]; rate_Reaction250 = Reaction250_k5a*x[38]; rate_Reaction251 = Reaction251_k3*x[47]; rate_Reaction252 = Reaction252_k5a*x[50]; rate_Reaction253 = Reaction253_k1a*x[20]*x[83]; rate_Reaction254 = Reaction254_d1a*x[73]; rate_Reaction255 = Reaction255_k1*x[73]; rate_Reaction256 = Reaction256_k1a*x[20]*x[74]; rate_Reaction257 = Reaction257_d1a*x[70]; rate_Reaction258 = Reaction258_k1*x[70]; rate_Reaction259 = Reaction259_k1a*x[20]*x[77]; rate_Reaction26 = Reaction26_d9*x[9]; rate_Reaction260 = Reaction260_d1a*x[71]; rate_Reaction261 = Reaction261_k1*x[71]; rate_Reaction262 = Reaction262_k1a*x[20]*x[80]; rate_Reaction263 = Reaction263_d1a*x[72]; rate_Reaction264 = Reaction264_k1*x[72]; rate_Reaction265 = Reaction265_k1a*x[20]*x[31]; rate_Reaction266 = Reaction266_d1a*x[61]; rate_Reaction267 = Reaction267_k1*x[61]; rate_Reaction268 = Reaction268_k1a*x[20]*x[22]; rate_Reaction269 = Reaction269_d1a*x[58]; rate_Reaction27 = Reaction27_k9*x[9]; rate_Reaction270 = Reaction270_k1*x[58]; rate_Reaction271 = Reaction271_k1a*x[20]*x[25]; rate_Reaction272 = Reaction272_d1a*x[59]; rate_Reaction273 = Reaction273_k1*x[59]; rate_Reaction274 = Reaction274_k1a*x[20]*x[28]; rate_Reaction275 = Reaction275_d1a*x[60]; rate_Reaction276 = Reaction276_k1*x[60]; rate_Reaction277 = Reaction277_k1a*x[20]*x[43]; rate_Reaction278 = Reaction278_d1a*x[65]; rate_Reaction279 = Reaction279_k1*x[65]; } public void __internalRateVarInitFunc_5(double time, double[] x) { rate_Reaction28 = Reaction28_a10*x[18]*x[2]; rate_Reaction280 = Reaction280_k1a*x[20]*x[34]; rate_Reaction281 = Reaction281_d1a*x[62]; rate_Reaction282 = Reaction282_k1*x[62]; rate_Reaction283 = Reaction283_k1a*x[20]*x[37]; rate_Reaction284 = Reaction284_d1a*x[63]; rate_Reaction285 = Reaction285_k1*x[63]; rate_Reaction286 = Reaction286_k1a*x[20]*x[40]; rate_Reaction287 = Reaction287_d1a*x[64]; rate_Reaction288 = Reaction288_k1*x[64]; rate_Reaction289 = Reaction289_k1a*x[20]*x[55]; rate_Reaction29 = Reaction29_d10*x[13]; rate_Reaction290 = Reaction290_d1a*x[69]; rate_Reaction291 = Reaction291_k1*x[69]; rate_Reaction292 = Reaction292_k1a*x[20]*x[46]; rate_Reaction293 = Reaction293_d1a*x[66]; rate_Reaction294 = Reaction294_k1*x[66]; rate_Reaction295 = Reaction295_k1a*x[20]*x[49]; rate_Reaction296 = Reaction296_d1a*x[67]; rate_Reaction297 = Reaction297_k1*x[67]; rate_Reaction298 = Reaction298_k1a*x[20]*x[52]; rate_Reaction299 = Reaction299_d1a*x[68]; rate_Reaction3 = Reaction3_k1*x[16]; rate_Reaction30 = Reaction30_k10*x[13]; rate_Reaction300 = Reaction300_k1*x[68]; rate_Reaction31 = Reaction31_kon*x[0]*x[85]; rate_Reaction32 = Reaction32_koff*x[33]; rate_Reaction33 = Reaction33_kon*x[0]*x[83]; rate_Reaction34 = Reaction34_koff*x[31]; rate_Reaction35 = Reaction35_kon*x[0]*x[84]; rate_Reaction36 = Reaction36_koff*x[32]; rate_Reaction37 = Reaction37_kon*x[0]*x[76]; rate_Reaction38 = Reaction38_koff*x[24]; rate_Reaction39 = Reaction39_kon*x[0]*x[74]; rate_Reaction4 = Reaction4_a2*x[21]*x[7]; rate_Reaction40 = Reaction40_koff*x[22]; rate_Reaction41 = Reaction41_kon*x[0]*x[75]; rate_Reaction42 = Reaction42_koff*x[23]; rate_Reaction43 = Reaction43_kon*x[0]*x[79]; rate_Reaction44 = Reaction44_koff*x[27]; } public void __internalRateVarInitFunc_6(double time, double[] x) { rate_Reaction45 = Reaction45_kon*x[0]*x[77]; rate_Reaction46 = Reaction46_koff*x[25]; rate_Reaction47 = Reaction47_kon*x[0]*x[78]; rate_Reaction48 = Reaction48_koff*x[26]; rate_Reaction49 = Reaction49_kon*x[0]*x[82]; rate_Reaction5 = Reaction5_d2*x[17]; rate_Reaction50 = Reaction50_koff*x[30]; rate_Reaction51 = Reaction51_kon*x[0]*x[80]; rate_Reaction52 = Reaction52_koff*x[28]; rate_Reaction53 = Reaction53_kon*x[0]*x[81]; rate_Reaction54 = Reaction54_koff*x[29]; rate_Reaction55 = Reaction55_kpon*x[1]*x[85]; rate_Reaction56 = Reaction56_kpoff*x[45]; rate_Reaction57 = Reaction57_kpon*x[1]*x[83]; rate_Reaction58 = Reaction58_kpoff*x[43]; rate_Reaction59 = Reaction59_kpon*x[1]*x[84]; rate_Reaction6 = Reaction6_k2*x[17]; rate_Reaction60 = Reaction60_kpoff*x[44]; rate_Reaction61 = Reaction61_kpon*x[1]*x[76]; rate_Reaction62 = Reaction62_kpoff*x[36]; rate_Reaction63 = Reaction63_kpon*x[1]*x[74]; rate_Reaction64 = Reaction64_kpoff*x[34]; rate_Reaction65 = Reaction65_kpon*x[1]*x[75]; rate_Reaction66 = Reaction66_kpoff*x[35]; rate_Reaction67 = Reaction67_kpon*x[1]*x[79]; rate_Reaction68 = Reaction68_kpoff*x[39]; rate_Reaction69 = Reaction69_kpon*x[1]*x[77]; rate_Reaction7 = Reaction7_a3*x[3]*x[7]; rate_Reaction70 = Reaction70_kpoff*x[37]; rate_Reaction71 = Reaction71_kpon*x[1]*x[78]; rate_Reaction72 = Reaction72_kpoff*x[38]; rate_Reaction73 = Reaction73_kpon*x[1]*x[82]; rate_Reaction74 = Reaction74_kpoff*x[42]; rate_Reaction75 = Reaction75_kpon*x[1]*x[80]; rate_Reaction76 = Reaction76_kpoff*x[40]; rate_Reaction77 = Reaction77_kpon*x[1]*x[81]; rate_Reaction78 = Reaction78_kpoff*x[41]; rate_Reaction79 = Reaction79_kpon*x[2]*x[85]; rate_Reaction8 = Reaction8_d3*x[10]; rate_Reaction80 = Reaction80_kpoff*x[57]; } public void __internalRateVarInitFunc_7(double time, double[] x) { rate_Reaction81 = Reaction81_kpon*x[2]*x[83]; rate_Reaction82 = Reaction82_kpoff*x[55]; rate_Reaction83 = Reaction83_kpon*x[2]*x[84]; rate_Reaction84 = Reaction84_kpoff*x[56]; rate_Reaction85 = Reaction85_kpon*x[2]*x[76]; rate_Reaction86 = Reaction86_kpoff*x[48]; rate_Reaction87 = Reaction87_kpon*x[2]*x[74]; rate_Reaction88 = Reaction88_kpoff*x[46]; rate_Reaction89 = Reaction89_kpon*x[2]*x[75]; rate_Reaction9 = Reaction9_k3*x[10]; rate_Reaction90 = Reaction90_kpoff*x[47]; rate_Reaction91 = Reaction91_kpon*x[2]*x[79]; rate_Reaction92 = Reaction92_kpoff*x[51]; rate_Reaction93 = Reaction93_kpon*x[2]*x[77]; rate_Reaction94 = Reaction94_kpoff*x[49]; rate_Reaction95 = Reaction95_kpon*x[2]*x[78]; rate_Reaction96 = Reaction96_kpoff*x[50]; rate_Reaction97 = Reaction97_kpon*x[2]*x[82]; rate_Reaction98 = Reaction98_kpoff*x[54]; rate_Reaction99 = Reaction99_kpon*x[2]*x[80]; } public void Init() { initialValues = getInitialValues(); /* * Initialize variables */ Reaction100_kpoff = 0.05; // initial value of Reaction100_kpoff Reaction102_kpoff = 0.05; // initial value of Reaction102_kpoff Reaction103_kon = 10.0; // initial value of Reaction103_kon Reaction104_koff = 0.5; // initial value of Reaction104_koff Reaction105_kon = 10.0; // initial value of Reaction105_kon Reaction106_koff = 0.5; // initial value of Reaction106_koff Reaction107_kon = 10.0; // initial value of Reaction107_kon Reaction108_koff = 0.5; // initial value of Reaction108_koff Reaction10_a4 = 10.0; // initial value of Reaction10_a4 Reaction110_kpoff = 0.05; // initial value of Reaction110_kpoff Reaction112_kpoff = 0.05; // initial value of Reaction112_kpoff Reaction114_kpoff = 0.05; // initial value of Reaction114_kpoff Reaction116_kpoff = 0.05; // initial value of Reaction116_kpoff Reaction118_kpoff = 0.05; // initial value of Reaction118_kpoff Reaction11_d4 = 0.8; // initial value of Reaction11_d4 Reaction120_kpoff = 0.05; // initial value of Reaction120_kpoff Reaction121_kon = 10.0; // initial value of Reaction121_kon Reaction122_koff = 0.5; // initial value of Reaction122_koff Reaction123_kon = 10.0; // initial value of Reaction123_kon Reaction124_koff = 0.5; // initial value of Reaction124_koff Reaction125_kon = 10.0; // initial value of Reaction125_kon Reaction126_koff = 0.5; // initial value of Reaction126_koff Reaction128_kpoff = 0.05; // initial value of Reaction128_kpoff Reaction12_k4 = 0.1; // initial value of Reaction12_k4 Reaction130_kpoff = 0.05; // initial value of Reaction130_kpoff Reaction132_kpoff = 0.05; // initial value of Reaction132_kpoff Reaction134_kpoff = 0.05; // initial value of Reaction134_kpoff Reaction136_kpoff = 0.05; // initial value of Reaction136_kpoff Reaction138_kpoff = 0.05; // initial value of Reaction138_kpoff Reaction139_kon = 10.0; // initial value of Reaction139_kon Reaction13_a5 = 3.3; // initial value of Reaction13_a5 Reaction140_koff = 0.5; // initial value of Reaction140_koff Reaction141_kon = 10.0; // initial value of Reaction141_kon Reaction142_koff = 0.5; // initial value of Reaction142_koff Reaction143_kon = 10.0; // initial value of Reaction143_kon Reaction144_koff = 0.5; // initial value of Reaction144_koff Reaction146_kpoff = 0.05; // initial value of Reaction146_kpoff Reaction148_kpoff = 0.05; // initial value of Reaction148_kpoff Reaction14_d5 = 0.4; // initial value of Reaction14_d5 Reaction150_kpoff = 0.05; // initial value of Reaction150_kpoff Reaction152_kpoff = 0.05; // initial value of Reaction152_kpoff Reaction154_kpoff = 0.05; // initial value of Reaction154_kpoff Reaction156_kpoff = 0.05; // initial value of Reaction156_kpoff Reaction157_kon = 10.0; // initial value of Reaction157_kon Reaction158_koff = 0.5; // initial value of Reaction158_koff Reaction159_kon = 10.0; // initial value of Reaction159_kon Reaction15_k5 = 0.1; // initial value of Reaction15_k5 Reaction160_koff = 0.5; // initial value of Reaction160_koff Reaction161_kon = 10.0; // initial value of Reaction161_kon Reaction162_koff = 0.5; // initial value of Reaction162_koff Reaction164_kpoff = 0.05; // initial value of Reaction164_kpoff Reaction166_kpoff = 0.05; // initial value of Reaction166_kpoff Reaction168_kpoff = 0.05; // initial value of Reaction168_kpoff Reaction16_a6 = 10.0; // initial value of Reaction16_a6 Reaction170_kpoff = 0.05; // initial value of Reaction170_kpoff Reaction172_kpoff = 0.05; // initial value of Reaction172_kpoff Reaction174_kpoff = 0.05; // initial value of Reaction174_kpoff Reaction175_kon = 10.0; // initial value of Reaction175_kon Reaction176_koff = 0.5; // initial value of Reaction176_koff Reaction178_kpoff = 0.05; // initial value of Reaction178_kpoff Reaction179_kon = 10.0; // initial value of Reaction179_kon Reaction17_d6 = 0.8; // initial value of Reaction17_d6 Reaction180_koff = 0.5; // initial value of Reaction180_koff Reaction182_kpoff = 0.05; // initial value of Reaction182_kpoff Reaction183_kon = 10.0; // initial value of Reaction183_kon Reaction184_koff = 0.5; // initial value of Reaction184_koff Reaction186_kpoff = 0.05; // initial value of Reaction186_kpoff Reaction187_kon = 10.0; // initial value of Reaction187_kon Reaction188_koff = 0.5; // initial value of Reaction188_koff Reaction18_k6 = 0.1; // initial value of Reaction18_k6 Reaction190_kpoff = 0.05; // initial value of Reaction190_kpoff Reaction191_kon = 10.0; // initial value of Reaction191_kon Reaction192_koff = 0.5; // initial value of Reaction192_koff Reaction194_kpoff = 0.05; // initial value of Reaction194_kpoff Reaction195_kon = 10.0; // initial value of Reaction195_kon Reaction196_koff = 0.5; // initial value of Reaction196_koff Reaction198_kpoff = 0.05; // initial value of Reaction198_kpoff Reaction199_kon = 10.0; // initial value of Reaction199_kon Reaction19_a7 = 20.0; // initial value of Reaction19_a7 Reaction1_a1 = 1.0; // initial value of Reaction1_a1 Reaction200_koff = 0.5; // initial value of Reaction200_koff Reaction202_kpoff = 0.05; // initial value of Reaction202_kpoff Reaction203_kon = 10.0; // initial value of Reaction203_kon Reaction204_koff = 0.5; // initial value of Reaction204_koff Reaction206_kpoff = 0.05; // initial value of Reaction206_kpoff Reaction207_kon = 10.0; // initial value of Reaction207_kon Reaction208_koff = 0.5; // initial value of Reaction208_koff Reaction20_d7 = 0.6; // initial value of Reaction20_d7 Reaction210_kpoff = 0.05; // initial value of Reaction210_kpoff Reaction211_kon = 10.0; // initial value of Reaction211_kon Reaction212_koff = 0.5; // initial value of Reaction212_koff Reaction214_kpoff = 0.05; // initial value of Reaction214_kpoff Reaction215_kon = 10.0; // initial value of Reaction215_kon Reaction216_koff = 0.5; // initial value of Reaction216_koff Reaction218_kpoff = 0.05; // initial value of Reaction218_kpoff Reaction219_kon = 10.0; // initial value of Reaction219_kon Reaction21_k7 = 0.1; // initial value of Reaction21_k7 Reaction220_koff = 0.5; // initial value of Reaction220_koff Reaction222_kpoff = 0.05; // initial value of Reaction222_kpoff Reaction223_kon = 10.0; // initial value of Reaction223_kon Reaction224_koff = 0.5; // initial value of Reaction224_koff Reaction226_kpoff = 0.05; // initial value of Reaction226_kpoff Reaction227_kon = 10.0; // initial value of Reaction227_kon Reaction228_koff = 0.5; // initial value of Reaction228_koff Reaction22_a8 = 5.0; // initial value of Reaction22_a8 Reaction230_kpoff = 0.05; // initial value of Reaction230_kpoff Reaction231_kon = 10.0; // initial value of Reaction231_kon Reaction232_koff = 0.5; // initial value of Reaction232_koff Reaction234_kpoff = 0.05; // initial value of Reaction234_kpoff Reaction235_kon = 10.0; // initial value of Reaction235_kon Reaction236_koff = 0.5; // initial value of Reaction236_koff Reaction238_kpoff = 0.05; // initial value of Reaction238_kpoff Reaction239_k7 = 0.1; // initial value of Reaction239_k7 Reaction23_d8 = 0.4; // initial value of Reaction23_d8 Reaction240_k7 = 0.1; // initial value of Reaction240_k7 Reaction241_k7 = 0.1; // initial value of Reaction241_k7 Reaction242_k9a = 0.1; // initial value of Reaction242_k9a Reaction243_k9a = 0.1; // initial value of Reaction243_k9a Reaction244_k9a = 0.1; // initial value of Reaction244_k9a Reaction245_k3 = 0.1; // initial value of Reaction245_k3 Reaction246_k5a = 0.1; // initial value of Reaction246_k5a Reaction247_k3 = 0.1; // initial value of Reaction247_k3 Reaction248_k5a = 0.1; // initial value of Reaction248_k5a Reaction249_k3 = 0.1; // initial value of Reaction249_k3 Reaction24_k8 = 0.1; // initial value of Reaction24_k8 Reaction250_k5a = 0.1; // initial value of Reaction250_k5a Reaction251_k3 = 0.1; // initial value of Reaction251_k3 Reaction252_k5a = 0.1; // initial value of Reaction252_k5a Reaction253_k1a = 100.0; // initial value of Reaction253_k1a Reaction255_k1 = 0.1; // initial value of Reaction255_k1 Reaction256_k1a = 100.0; // initial value of Reaction256_k1a Reaction258_k1 = 0.1; // initial value of Reaction258_k1 Reaction259_k1a = 100.0; // initial value of Reaction259_k1a Reaction25_a9 = 20.0; // initial value of Reaction25_a9 Reaction261_k1 = 0.1; // initial value of Reaction261_k1 Reaction262_k1a = 100.0; // initial value of Reaction262_k1a Reaction264_k1 = 0.1; // initial value of Reaction264_k1 Reaction265_k1a = 100.0; // initial value of Reaction265_k1a Reaction267_k1 = 0.1; // initial value of Reaction267_k1 Reaction268_k1a = 100.0; // initial value of Reaction268_k1a Reaction26_d9 = 0.6; // initial value of Reaction26_d9 Reaction270_k1 = 0.1; // initial value of Reaction270_k1 Reaction271_k1a = 100.0; // initial value of Reaction271_k1a Reaction273_k1 = 0.1; // initial value of Reaction273_k1 Reaction274_k1a = 100.0; // initial value of Reaction274_k1a Reaction276_k1 = 0.1; // initial value of Reaction276_k1 Reaction277_k1a = 100.0; // initial value of Reaction277_k1a Reaction279_k1 = 0.1; // initial value of Reaction279_k1 Reaction27_k9 = 0.1; // initial value of Reaction27_k9 Reaction280_k1a = 100.0; // initial value of Reaction280_k1a Reaction282_k1 = 0.1; // initial value of Reaction282_k1 Reaction283_k1a = 100.0; // initial value of Reaction283_k1a Reaction285_k1 = 0.1; // initial value of Reaction285_k1 Reaction286_k1a = 100.0; // initial value of Reaction286_k1a Reaction288_k1 = 0.1; // initial value of Reaction288_k1 Reaction289_k1a = 100.0; // initial value of Reaction289_k1a Reaction28_a10 = 5.0; // initial value of Reaction28_a10 Reaction291_k1 = 0.1; // initial value of Reaction291_k1 Reaction292_k1a = 100.0; // initial value of Reaction292_k1a Reaction294_k1 = 0.1; // initial value of Reaction294_k1 Reaction295_k1a = 100.0; // initial value of Reaction295_k1a Reaction297_k1 = 0.1; // initial value of Reaction297_k1 Reaction298_k1a = 100.0; // initial value of Reaction298_k1a Reaction29_d10 = 0.4; // initial value of Reaction29_d10 Reaction2_d1 = 0.4; // initial value of Reaction2_d1 Reaction300_k1 = 0.1; // initial value of Reaction300_k1 Reaction30_k10 = 0.1; // initial value of Reaction30_k10 Reaction31_kon = 10.0; // initial value of Reaction31_kon Reaction32_koff = 0.5; // initial value of Reaction32_koff Reaction33_kon = 10.0; // initial value of Reaction33_kon Reaction34_koff = 0.5; // initial value of Reaction34_koff Reaction35_kon = 10.0; // initial value of Reaction35_kon Reaction36_koff = 0.5; // initial value of Reaction36_koff Reaction37_kon = 10.0; // initial value of Reaction37_kon Reaction38_koff = 0.5; // initial value of Reaction38_koff Reaction39_kon = 10.0; // initial value of Reaction39_kon Reaction3_k1 = 0.1; // initial value of Reaction3_k1 Reaction40_koff = 0.5; // initial value of Reaction40_koff Reaction41_kon = 10.0; // initial value of Reaction41_kon Reaction42_koff = 0.5; // initial value of Reaction42_koff Reaction43_kon = 10.0; // initial value of Reaction43_kon Reaction44_koff = 0.5; // initial value of Reaction44_koff Reaction45_kon = 10.0; // initial value of Reaction45_kon Reaction46_koff = 0.5; // initial value of Reaction46_koff Reaction47_kon = 10.0; // initial value of Reaction47_kon Reaction48_koff = 0.5; // initial value of Reaction48_koff Reaction49_kon = 10.0; // initial value of Reaction49_kon Reaction4_a2 = 0.5; // initial value of Reaction4_a2 Reaction50_koff = 0.5; // initial value of Reaction50_koff Reaction51_kon = 10.0; // initial value of Reaction51_kon Reaction52_koff = 0.5; // initial value of Reaction52_koff Reaction53_kon = 10.0; // initial value of Reaction53_kon Reaction54_koff = 0.5; // initial value of Reaction54_koff Reaction56_kpoff = 0.05; // initial value of Reaction56_kpoff Reaction58_kpoff = 0.05; // initial value of Reaction58_kpoff Reaction5_d2 = 0.5; // initial value of Reaction5_d2 Reaction60_kpoff = 0.05; // initial value of Reaction60_kpoff Reaction62_kpoff = 0.05; // initial value of Reaction62_kpoff Reaction64_kpoff = 0.05; // initial value of Reaction64_kpoff Reaction66_kpoff = 0.05; // initial value of Reaction66_kpoff Reaction68_kpoff = 0.05; // initial value of Reaction68_kpoff Reaction6_k2 = 0.1; // initial value of Reaction6_k2 Reaction70_kpoff = 0.05; // initial value of Reaction70_kpoff Reaction72_kpoff = 0.05; // initial value of Reaction72_kpoff Reaction74_kpoff = 0.05; // initial value of Reaction74_kpoff Reaction76_kpoff = 0.05; // initial value of Reaction76_kpoff Reaction78_kpoff = 0.05; // initial value of Reaction78_kpoff Reaction7_a3 = 3.3; // initial value of Reaction7_a3 Reaction80_kpoff = 0.05; // initial value of Reaction80_kpoff Reaction82_kpoff = 0.05; // initial value of Reaction82_kpoff Reaction84_kpoff = 0.05; // initial value of Reaction84_kpoff Reaction86_kpoff = 0.05; // initial value of Reaction86_kpoff Reaction88_kpoff = 0.05; // initial value of Reaction88_kpoff Reaction8_d3 = 0.42; // initial value of Reaction8_d3 Reaction90_kpoff = 0.05; // initial value of Reaction90_kpoff Reaction92_kpoff = 0.05; // initial value of Reaction92_kpoff Reaction94_kpoff = 0.05; // initial value of Reaction94_kpoff Reaction96_kpoff = 0.05; // initial value of Reaction96_kpoff Reaction98_kpoff = 0.05; // initial value of Reaction98_kpoff Reaction9_k3 = 0.1; // initial value of Reaction9_k3 } /* * Model variables initial values */ protected double rate_Reaction1; protected double rate_Reaction10; protected double rate_Reaction100; protected double rate_Reaction101; protected double rate_Reaction102; protected double rate_Reaction103; protected double rate_Reaction104; protected double rate_Reaction105; protected double rate_Reaction106; protected double rate_Reaction107; protected double rate_Reaction108; protected double rate_Reaction109; protected double rate_Reaction11; protected double rate_Reaction110; protected double rate_Reaction111; protected double rate_Reaction112; protected double rate_Reaction113; protected double rate_Reaction114; protected double rate_Reaction115; protected double rate_Reaction116; protected double rate_Reaction117; protected double rate_Reaction118; protected double rate_Reaction119; protected double rate_Reaction12; protected double rate_Reaction120; protected double rate_Reaction121; protected double rate_Reaction122; protected double rate_Reaction123; protected double rate_Reaction124; protected double rate_Reaction125; protected double rate_Reaction126; protected double rate_Reaction127; protected double rate_Reaction128; protected double rate_Reaction129; protected double rate_Reaction13; protected double rate_Reaction130; protected double rate_Reaction131; protected double rate_Reaction132; protected double rate_Reaction133; protected double rate_Reaction134; protected double rate_Reaction135; protected double rate_Reaction136; protected double rate_Reaction137; protected double rate_Reaction138; protected double rate_Reaction139; protected double rate_Reaction14; protected double rate_Reaction140; protected double rate_Reaction141; protected double rate_Reaction142; protected double rate_Reaction143; protected double rate_Reaction144; protected double rate_Reaction145; protected double rate_Reaction146; protected double rate_Reaction147; protected double rate_Reaction148; protected double rate_Reaction149; protected double rate_Reaction15; protected double rate_Reaction150; protected double rate_Reaction151; protected double rate_Reaction152; protected double rate_Reaction153; protected double rate_Reaction154; protected double rate_Reaction155; protected double rate_Reaction156; protected double rate_Reaction157; protected double rate_Reaction158; protected double rate_Reaction159; protected double rate_Reaction16; protected double rate_Reaction160; protected double rate_Reaction161; protected double rate_Reaction162; protected double rate_Reaction163; protected double rate_Reaction164; protected double rate_Reaction165; protected double rate_Reaction166; protected double rate_Reaction167; protected double rate_Reaction168; protected double rate_Reaction169; protected double rate_Reaction17; protected double rate_Reaction170; protected double rate_Reaction171; protected double rate_Reaction172; protected double rate_Reaction173; protected double rate_Reaction174; protected double rate_Reaction175; protected double rate_Reaction176; protected double rate_Reaction177; protected double rate_Reaction178; protected double rate_Reaction179; protected double rate_Reaction18; protected double rate_Reaction180; protected double rate_Reaction181; protected double rate_Reaction182; protected double rate_Reaction183; protected double rate_Reaction184; protected double rate_Reaction185; protected double rate_Reaction186; protected double rate_Reaction187; protected double rate_Reaction188; protected double rate_Reaction189; protected double rate_Reaction19; protected double rate_Reaction190; protected double rate_Reaction191; protected double rate_Reaction192; protected double rate_Reaction193; protected double rate_Reaction194; protected double rate_Reaction195; protected double rate_Reaction196; protected double rate_Reaction197; protected double rate_Reaction198; protected double rate_Reaction199; protected double rate_Reaction2; protected double rate_Reaction20; protected double rate_Reaction200; protected double rate_Reaction201; protected double rate_Reaction202; protected double rate_Reaction203; protected double rate_Reaction204; protected double rate_Reaction205; protected double rate_Reaction206; protected double rate_Reaction207; protected double rate_Reaction208; protected double rate_Reaction209; protected double rate_Reaction21; protected double rate_Reaction210; protected double rate_Reaction211; protected double rate_Reaction212; protected double rate_Reaction213; protected double rate_Reaction214; protected double rate_Reaction215; protected double rate_Reaction216; protected double rate_Reaction217; protected double rate_Reaction218; protected double rate_Reaction219; protected double rate_Reaction22; protected double rate_Reaction220; protected double rate_Reaction221; protected double rate_Reaction222; protected double rate_Reaction223; protected double rate_Reaction224; protected double rate_Reaction225; protected double rate_Reaction226; protected double rate_Reaction227; protected double rate_Reaction228; protected double rate_Reaction229; protected double rate_Reaction23; protected double rate_Reaction230; protected double rate_Reaction231; protected double rate_Reaction232; protected double rate_Reaction233; protected double rate_Reaction234; protected double rate_Reaction235; protected double rate_Reaction236; protected double rate_Reaction237; protected double rate_Reaction238; protected double rate_Reaction239; protected double rate_Reaction24; protected double rate_Reaction240; protected double rate_Reaction241; protected double rate_Reaction242; protected double rate_Reaction243; protected double rate_Reaction244; protected double rate_Reaction245; protected double rate_Reaction246; protected double rate_Reaction247; protected double rate_Reaction248; protected double rate_Reaction249; protected double rate_Reaction25; protected double rate_Reaction250; protected double rate_Reaction251; protected double rate_Reaction252; protected double rate_Reaction253; protected double rate_Reaction254; protected double rate_Reaction255; protected double rate_Reaction256; protected double rate_Reaction257; protected double rate_Reaction258; protected double rate_Reaction259; protected double rate_Reaction26; protected double rate_Reaction260; protected double rate_Reaction261; protected double rate_Reaction262; protected double rate_Reaction263; protected double rate_Reaction264; protected double rate_Reaction265; protected double rate_Reaction266; protected double rate_Reaction267; protected double rate_Reaction268; protected double rate_Reaction269; protected double rate_Reaction27; protected double rate_Reaction270; protected double rate_Reaction271; protected double rate_Reaction272; protected double rate_Reaction273; protected double rate_Reaction274; protected double rate_Reaction275; protected double rate_Reaction276; protected double rate_Reaction277; protected double rate_Reaction278; protected double rate_Reaction279; protected double rate_Reaction28; protected double rate_Reaction280; protected double rate_Reaction281; protected double rate_Reaction282; protected double rate_Reaction283; protected double rate_Reaction284; protected double rate_Reaction285; protected double rate_Reaction286; protected double rate_Reaction287; protected double rate_Reaction288; protected double rate_Reaction289; protected double rate_Reaction29; protected double rate_Reaction290; protected double rate_Reaction291; protected double rate_Reaction292; protected double rate_Reaction293; protected double rate_Reaction294; protected double rate_Reaction295; protected double rate_Reaction296; protected double rate_Reaction297; protected double rate_Reaction298; protected double rate_Reaction299; protected double rate_Reaction3; protected double rate_Reaction30; protected double rate_Reaction300; protected double rate_Reaction31; protected double rate_Reaction32; protected double rate_Reaction33; protected double rate_Reaction34; protected double rate_Reaction35; protected double rate_Reaction36; protected double rate_Reaction37; protected double rate_Reaction38; protected double rate_Reaction39; protected double rate_Reaction4; protected double rate_Reaction40; protected double rate_Reaction41; protected double rate_Reaction42; protected double rate_Reaction43; protected double rate_Reaction44; protected double rate_Reaction45; protected double rate_Reaction46; protected double rate_Reaction47; protected double rate_Reaction48; protected double rate_Reaction49; protected double rate_Reaction5; protected double rate_Reaction50; protected double rate_Reaction51; protected double rate_Reaction52; protected double rate_Reaction53; protected double rate_Reaction54; protected double rate_Reaction55; protected double rate_Reaction56; protected double rate_Reaction57; protected double rate_Reaction58; protected double rate_Reaction59; protected double rate_Reaction6; protected double rate_Reaction60; protected double rate_Reaction61; protected double rate_Reaction62; protected double rate_Reaction63; protected double rate_Reaction64; protected double rate_Reaction65; protected double rate_Reaction66; protected double rate_Reaction67; protected double rate_Reaction68; protected double rate_Reaction69; protected double rate_Reaction7; protected double rate_Reaction70; protected double rate_Reaction71; protected double rate_Reaction72; protected double rate_Reaction73; protected double rate_Reaction74; protected double rate_Reaction75; protected double rate_Reaction76; protected double rate_Reaction77; protected double rate_Reaction78; protected double rate_Reaction79; protected double rate_Reaction8; protected double rate_Reaction80; protected double rate_Reaction81; protected double rate_Reaction82; protected double rate_Reaction83; protected double rate_Reaction84; protected double rate_Reaction85; protected double rate_Reaction86; protected double rate_Reaction87; protected double rate_Reaction88; protected double rate_Reaction89; protected double rate_Reaction9; protected double rate_Reaction90; protected double rate_Reaction91; protected double rate_Reaction92; protected double rate_Reaction93; protected double rate_Reaction94; protected double rate_Reaction95; protected double rate_Reaction96; protected double rate_Reaction97; protected double rate_Reaction98; protected double rate_Reaction99; protected double Reaction100_kpoff; protected double Reaction101_kpon; protected double Reaction102_kpoff; protected double Reaction103_kon; protected double Reaction104_koff; protected double Reaction105_kon; protected double Reaction106_koff; protected double Reaction107_kon; protected double Reaction108_koff; protected double Reaction109_kpon; protected double Reaction10_a4; protected double Reaction110_kpoff; protected double Reaction111_kpon; protected double Reaction112_kpoff; protected double Reaction113_kpon; protected double Reaction114_kpoff; protected double Reaction115_kpon; protected double Reaction116_kpoff; protected double Reaction117_kpon; protected double Reaction118_kpoff; protected double Reaction119_kpon; protected double Reaction11_d4; protected double Reaction120_kpoff; protected double Reaction121_kon; protected double Reaction122_koff; protected double Reaction123_kon; protected double Reaction124_koff; protected double Reaction125_kon; protected double Reaction126_koff; protected double Reaction127_kpon; protected double Reaction128_kpoff; protected double Reaction129_kpon; protected double Reaction12_k4; protected double Reaction130_kpoff; protected double Reaction131_kpon; protected double Reaction132_kpoff; protected double Reaction133_kpon; protected double Reaction134_kpoff; protected double Reaction135_kpon; protected double Reaction136_kpoff; protected double Reaction137_kpon; protected double Reaction138_kpoff; protected double Reaction139_kon; protected double Reaction13_a5; protected double Reaction140_koff; protected double Reaction141_kon; protected double Reaction142_koff; protected double Reaction143_kon; protected double Reaction144_koff; protected double Reaction145_kpon; protected double Reaction146_kpoff; protected double Reaction147_kpon; protected double Reaction148_kpoff; protected double Reaction149_kpon; protected double Reaction14_d5; protected double Reaction150_kpoff; protected double Reaction151_kpon; protected double Reaction152_kpoff; protected double Reaction153_kpon; protected double Reaction154_kpoff; protected double Reaction155_kpon; protected double Reaction156_kpoff; protected double Reaction157_kon; protected double Reaction158_koff; protected double Reaction159_kon; protected double Reaction15_k5; protected double Reaction160_koff; protected double Reaction161_kon; protected double Reaction162_koff; protected double Reaction163_kpon; protected double Reaction164_kpoff; protected double Reaction165_kpon; protected double Reaction166_kpoff; protected double Reaction167_kpon; protected double Reaction168_kpoff; protected double Reaction169_kpon; protected double Reaction16_a6; protected double Reaction170_kpoff; protected double Reaction171_kpon; protected double Reaction172_kpoff; protected double Reaction173_kpon; protected double Reaction174_kpoff; protected double Reaction175_kon; protected double Reaction176_koff; protected double Reaction177_kpon; protected double Reaction178_kpoff; protected double Reaction179_kon; protected double Reaction17_d6; protected double Reaction180_koff; protected double Reaction181_kpon; protected double Reaction182_kpoff; protected double Reaction183_kon; protected double Reaction184_koff; protected double Reaction185_kpon; protected double Reaction186_kpoff; protected double Reaction187_kon; protected double Reaction188_koff; protected double Reaction189_kpon; protected double Reaction18_k6; protected double Reaction190_kpoff; protected double Reaction191_kon; protected double Reaction192_koff; protected double Reaction193_kpon; protected double Reaction194_kpoff; protected double Reaction195_kon; protected double Reaction196_koff; protected double Reaction197_kpon; protected double Reaction198_kpoff; protected double Reaction199_kon; protected double Reaction19_a7; protected double Reaction1_a1; protected double Reaction200_koff; protected double Reaction201_kpon; protected double Reaction202_kpoff; protected double Reaction203_kon; protected double Reaction204_koff; protected double Reaction205_kpon; protected double Reaction206_kpoff; protected double Reaction207_kon; protected double Reaction208_koff; protected double Reaction209_kpon; protected double Reaction20_d7; protected double Reaction210_kpoff; protected double Reaction211_kon; protected double Reaction212_koff; protected double Reaction213_kpon; protected double Reaction214_kpoff; protected double Reaction215_kon; protected double Reaction216_koff; protected double Reaction217_kpon; protected double Reaction218_kpoff; protected double Reaction219_kon; protected double Reaction21_k7; protected double Reaction220_koff; protected double Reaction221_kpon; protected double Reaction222_kpoff; protected double Reaction223_kon; protected double Reaction224_koff; protected double Reaction225_kpon; protected double Reaction226_kpoff; protected double Reaction227_kon; protected double Reaction228_koff; protected double Reaction229_kpon; protected double Reaction22_a8; protected double Reaction230_kpoff; protected double Reaction231_kon; protected double Reaction232_koff; protected double Reaction233_kpon; protected double Reaction234_kpoff; protected double Reaction235_kon; protected double Reaction236_koff; protected double Reaction237_kpon; protected double Reaction238_kpoff; protected double Reaction239_k7; protected double Reaction23_d8; protected double Reaction240_k7; protected double Reaction241_k7; protected double Reaction242_k9a; protected double Reaction243_k9a; protected double Reaction244_k9a; protected double Reaction245_k3; protected double Reaction246_k5a; protected double Reaction247_k3; protected double Reaction248_k5a; protected double Reaction249_k3; protected double Reaction24_k8; protected double Reaction250_k5a; protected double Reaction251_k3; protected double Reaction252_k5a; protected double Reaction253_k1a; protected double Reaction254_d1a; protected double Reaction255_k1; protected double Reaction256_k1a; protected double Reaction257_d1a; protected double Reaction258_k1; protected double Reaction259_k1a; protected double Reaction25_a9; protected double Reaction260_d1a; protected double Reaction261_k1; protected double Reaction262_k1a; protected double Reaction263_d1a; protected double Reaction264_k1; protected double Reaction265_k1a; protected double Reaction266_d1a; protected double Reaction267_k1; protected double Reaction268_k1a; protected double Reaction269_d1a; protected double Reaction26_d9; protected double Reaction270_k1; protected double Reaction271_k1a; protected double Reaction272_d1a; protected double Reaction273_k1; protected double Reaction274_k1a; protected double Reaction275_d1a; protected double Reaction276_k1; protected double Reaction277_k1a; protected double Reaction278_d1a; protected double Reaction279_k1; protected double Reaction27_k9; protected double Reaction280_k1a; protected double Reaction281_d1a; protected double Reaction282_k1; protected double Reaction283_k1a; protected double Reaction284_d1a; protected double Reaction285_k1; protected double Reaction286_k1a; protected double Reaction287_d1a; protected double Reaction288_k1; protected double Reaction289_k1a; protected double Reaction28_a10; protected double Reaction290_d1a; protected double Reaction291_k1; protected double Reaction292_k1a; protected double Reaction293_d1a; protected double Reaction294_k1; protected double Reaction295_k1a; protected double Reaction296_d1a; protected double Reaction297_k1; protected double Reaction298_k1a; protected double Reaction299_d1a; protected double Reaction29_d10; protected double Reaction2_d1; protected double Reaction300_k1; protected double Reaction30_k10; protected double Reaction31_kon; protected double Reaction32_koff; protected double Reaction33_kon; protected double Reaction34_koff; protected double Reaction35_kon; protected double Reaction36_koff; protected double Reaction37_kon; protected double Reaction38_koff; protected double Reaction39_kon; protected double Reaction3_k1; protected double Reaction40_koff; protected double Reaction41_kon; protected double Reaction42_koff; protected double Reaction43_kon; protected double Reaction44_koff; protected double Reaction45_kon; protected double Reaction46_koff; protected double Reaction47_kon; protected double Reaction48_koff; protected double Reaction49_kon; protected double Reaction4_a2; protected double Reaction50_koff; protected double Reaction51_kon; protected double Reaction52_koff; protected double Reaction53_kon; protected double Reaction54_koff; protected double Reaction55_kpon; protected double Reaction56_kpoff; protected double Reaction57_kpon; protected double Reaction58_kpoff; protected double Reaction59_kpon; protected double Reaction5_d2; protected double Reaction60_kpoff; protected double Reaction61_kpon; protected double Reaction62_kpoff; protected double Reaction63_kpon; protected double Reaction64_kpoff; protected double Reaction65_kpon; protected double Reaction66_kpoff; protected double Reaction67_kpon; protected double Reaction68_kpoff; protected double Reaction69_kpon; protected double Reaction6_k2; protected double Reaction70_kpoff; protected double Reaction71_kpon; protected double Reaction72_kpoff; protected double Reaction73_kpon; protected double Reaction74_kpoff; protected double Reaction75_kpon; protected double Reaction76_kpoff; protected double Reaction77_kpon; protected double Reaction78_kpoff; protected double Reaction79_kpon; protected double Reaction7_a3; protected double Reaction80_kpoff; protected double Reaction81_kpon; protected double Reaction82_kpoff; protected double Reaction83_kpon; protected double Reaction84_kpoff; protected double Reaction85_kpon; protected double Reaction86_kpoff; protected double Reaction87_kpon; protected double Reaction88_kpoff; protected double Reaction89_kpon; protected double Reaction8_d3; protected double Reaction90_kpoff; protected double Reaction91_kpon; protected double Reaction92_kpoff; protected double Reaction93_kpon; protected double Reaction94_kpoff; protected double Reaction95_kpon; protected double Reaction96_kpoff; protected double Reaction97_kpon; protected double Reaction98_kpoff; protected double Reaction99_kpon; protected double Reaction9_k3; public double[] extendResult(double time,double [] x) { this.time = time; double[] y = new double[86]; y[0] = x[0]; y[1] = x[1]; y[2] = x[2]; y[3] = x[3]; y[4] = x[4]; y[5] = x[5]; y[6] = x[6]; y[7] = x[7]; y[8] = x[8]; y[9] = x[9]; y[10] = x[10]; y[11] = x[11]; y[12] = x[12]; y[13] = x[13]; y[14] = x[14]; y[15] = x[15]; y[16] = x[16]; y[17] = x[17]; y[18] = x[18]; y[19] = x[19]; y[20] = x[20]; y[21] = x[21]; y[22] = x[22]; y[23] = x[23]; y[24] = x[24]; y[25] = x[25]; y[26] = x[26]; y[27] = x[27]; y[28] = x[28]; y[29] = x[29]; y[30] = x[30]; y[31] = x[31]; y[32] = x[32]; y[33] = x[33]; y[34] = x[34]; y[35] = x[35]; y[36] = x[36]; y[37] = x[37]; y[38] = x[38]; y[39] = x[39]; y[40] = x[40]; y[41] = x[41]; y[42] = x[42]; y[43] = x[43]; y[44] = x[44]; y[45] = x[45]; y[46] = x[46]; y[47] = x[47]; y[48] = x[48]; y[49] = x[49]; y[50] = x[50]; y[51] = x[51]; y[52] = x[52]; y[53] = x[53]; y[54] = x[54]; y[55] = x[55]; y[56] = x[56]; y[57] = x[57]; y[58] = x[58]; y[59] = x[59]; y[60] = x[60]; y[61] = x[61]; y[62] = x[62]; y[63] = x[63]; y[64] = x[64]; y[65] = x[65]; y[66] = x[66]; y[67] = x[67]; y[68] = x[68]; y[69] = x[69]; y[70] = x[70]; y[71] = x[71]; y[72] = x[72]; y[73] = x[73]; y[74] = x[74]; y[75] = x[75]; y[76] = x[76]; y[77] = x[77]; y[78] = x[78]; y[79] = x[79]; y[80] = x[80]; y[81] = x[81]; y[82] = x[82]; y[83] = x[83]; y[84] = x[84]; y[85] = x[85]; return y; } public double[] getInitialValues() { double [] x = new double[86]; this.time = 0.0; x[0] = 0.4; // - $"Cytoplasm.K_1_0" x[1] = 0.0; // - $"Cytoplasm.K_1_1" x[2] = 0.0; // - $"Cytoplasm.K_1_2" x[3] = 0.2; // - $"Cytoplasm.K_2_0" x[4] = 0.0; // - $"Cytoplasm.K_2_1" x[5] = 0.0; // - $"Cytoplasm.K_2_2" x[6] = 0.3; // - $"Cytoplasm.K_3_0" x[7] = 0.0; // - $"Cytoplasm.K_3_1" x[8] = 0.0; // - $"Cytoplasm.K_K_1_0_2_2" x[9] = 0.0; // - $"Cytoplasm.K_K_1_1_2_2" x[10] = 0.0; // - $"Cytoplasm.K_K_2_0_3_1" x[11] = 0.0; // - $"Cytoplasm.K_K_2_1_3_1" x[12] = 0.0; // - $"Cytoplasm.K_MAPKP_1_1" x[13] = 0.0; // - $"Cytoplasm.K_MAPKP_1_2" x[14] = 0.0; // - $"Cytoplasm.K_MEKP_2_1" x[15] = 0.0; // - $"Cytoplasm.K_MEKP_2_2" x[16] = 0.0; // - $"Cytoplasm.K_RAFK_3_0" x[17] = 0.0; // - $"Cytoplasm.K_RAFP_3_1" x[18] = 0.3; // - $"Cytoplasm.MAPKP" x[19] = 0.2; // - $"Cytoplasm.MEKP" x[20] = 0.1; // - $"Cytoplasm.RAFK" x[21] = 0.3; // - $"Cytoplasm.RAFP" x[22] = 0.0; // - $"Cytoplasm.S_0_0_0" x[23] = 0.0; // - $"Cytoplasm.S_0_0_1" x[24] = 0.0; // - $"Cytoplasm.S_0_0_m1" x[25] = 0.0; // - $"Cytoplasm.S_0_1_0" x[26] = 0.0; // - $"Cytoplasm.S_0_1_1" x[27] = 0.0; // - $"Cytoplasm.S_0_1_m1" x[28] = 0.0; // - $"Cytoplasm.S_0_2_0" x[29] = 0.0; // - $"Cytoplasm.S_0_2_1" x[30] = 0.0; // - $"Cytoplasm.S_0_2_m1" x[31] = 0.0; // - $"Cytoplasm.S_0_m1_0" x[32] = 0.0; // - $"Cytoplasm.S_0_m1_1" x[33] = 0.0; // - $"Cytoplasm.S_0_m1_m1" x[34] = 0.0; // - $"Cytoplasm.S_1_0_0" x[35] = 0.0; // - $"Cytoplasm.S_1_0_1" x[36] = 0.0; // - $"Cytoplasm.S_1_0_m1" x[37] = 0.0; // - $"Cytoplasm.S_1_1_0" x[38] = 0.0; // - $"Cytoplasm.S_1_1_1" x[39] = 0.0; // - $"Cytoplasm.S_1_1_m1" x[40] = 0.0; // - $"Cytoplasm.S_1_2_0" x[41] = 0.0; // - $"Cytoplasm.S_1_2_1" x[42] = 0.0; // - $"Cytoplasm.S_1_2_m1" x[43] = 0.0; // - $"Cytoplasm.S_1_m1_0" x[44] = 0.0; // - $"Cytoplasm.S_1_m1_1" x[45] = 0.0; // - $"Cytoplasm.S_1_m1_m1" x[46] = 0.0; // - $"Cytoplasm.S_2_0_0" x[47] = 0.0; // - $"Cytoplasm.S_2_0_1" x[48] = 0.0; // - $"Cytoplasm.S_2_0_m1" x[49] = 0.0; // - $"Cytoplasm.S_2_1_0" x[50] = 0.0; // - $"Cytoplasm.S_2_1_1" x[51] = 0.0; // - $"Cytoplasm.S_2_1_m1" x[52] = 0.0; // - $"Cytoplasm.S_2_2_0" x[53] = 0.0; // - $"Cytoplasm.S_2_2_1" x[54] = 0.0; // - $"Cytoplasm.S_2_2_m1" x[55] = 0.0; // - $"Cytoplasm.S_2_m1_0" x[56] = 0.0; // - $"Cytoplasm.S_2_m1_1" x[57] = 0.0; // - $"Cytoplasm.S_2_m1_m1" x[58] = 0.0; // - $"Cytoplasm.S_RAFK_0_0_0" x[59] = 0.0; // - $"Cytoplasm.S_RAFK_0_1_0" x[60] = 0.0; // - $"Cytoplasm.S_RAFK_0_2_0" x[61] = 0.0; // - $"Cytoplasm.S_RAFK_0_m1_0" x[62] = 0.0; // - $"Cytoplasm.S_RAFK_1_0_0" x[63] = 0.0; // - $"Cytoplasm.S_RAFK_1_1_0" x[64] = 0.0; // - $"Cytoplasm.S_RAFK_1_2_0" x[65] = 0.0; // - $"Cytoplasm.S_RAFK_1_m1_0" x[66] = 0.0; // - $"Cytoplasm.S_RAFK_2_0_0" x[67] = 0.0; // - $"Cytoplasm.S_RAFK_2_1_0" x[68] = 0.0; // - $"Cytoplasm.S_RAFK_2_2_0" x[69] = 0.0; // - $"Cytoplasm.S_RAFK_2_m1_0" x[70] = 0.0; // - $"Cytoplasm.S_RAFK_m1_0_0" x[71] = 0.0; // - $"Cytoplasm.S_RAFK_m1_1_0" x[72] = 0.0; // - $"Cytoplasm.S_RAFK_m1_2_0" x[73] = 0.0; // - $"Cytoplasm.S_RAFK_m1_m1_0" x[74] = 0.0; // - $"Cytoplasm.S_m1_0_0" x[75] = 0.0; // - $"Cytoplasm.S_m1_0_1" x[76] = 0.0; // - $"Cytoplasm.S_m1_0_m1" x[77] = 0.0; // - $"Cytoplasm.S_m1_1_0" x[78] = 0.0; // - $"Cytoplasm.S_m1_1_1" x[79] = 0.0; // - $"Cytoplasm.S_m1_1_m1" x[80] = 0.0; // - $"Cytoplasm.S_m1_2_0" x[81] = 0.0; // - $"Cytoplasm.S_m1_2_1" x[82] = 0.0; // - $"Cytoplasm.S_m1_2_m1" x[83] = 0.0; // - $"Cytoplasm.S_m1_m1_0" x[84] = 0.0; // - $"Cytoplasm.S_m1_m1_1" x[85] = 0.1; // - $"Cytoplasm.S_m1_m1_m1" __internalRateVarInitFunc_0(time, x); __internalRateVarInitFunc_1(time, x); __internalRateVarInitFunc_2(time, x); __internalRateVarInitFunc_3(time, x); __internalRateVarInitFunc_4(time, x); __internalRateVarInitFunc_5(time, x); __internalRateVarInitFunc_6(time, x); __internalRateVarInitFunc_7(time, x); return x; } /* * code for algebraic rules calculations */ /* * end of code for algebraic rules calculations */ protected void calculateRates(double time, double[] x) { __internalRateVarInitFunc_0(time, x); __internalRateVarInitFunc_1(time, x); __internalRateVarInitFunc_2(time, x); __internalRateVarInitFunc_3(time, x); __internalRateVarInitFunc_4(time, x); __internalRateVarInitFunc_5(time, x); __internalRateVarInitFunc_6(time, x); __internalRateVarInitFunc_7(time, x); } /* * calculate dy/dt for 'BIOMD0000000014.xml' model */ public void __internalDyDt_0(double time, double [] x, double[] result) { result[0] = -rate_Reaction19+rate_Reaction20+rate_Reaction24-rate_Reaction31+rate_Reaction32-rate_Reaction33+rate_Reaction34-rate_Reaction35+rate_Reaction36-rate_Reaction37+rate_Reaction38-rate_Reaction39+rate_Reaction40-rate_Reaction41+rate_Reaction42-rate_Reaction43+rate_Reaction44-rate_Reaction45+rate_Reaction46-rate_Reaction47+rate_Reaction48-rate_Reaction49+rate_Reaction50-rate_Reaction51+rate_Reaction52-rate_Reaction53+rate_Reaction54; result[1] = +rate_Reaction21-rate_Reaction22+rate_Reaction23-rate_Reaction25+rate_Reaction26+rate_Reaction30-rate_Reaction55+rate_Reaction56-rate_Reaction57+rate_Reaction58-rate_Reaction59+rate_Reaction60-rate_Reaction61+rate_Reaction62-rate_Reaction63+rate_Reaction64-rate_Reaction65+rate_Reaction66-rate_Reaction67+rate_Reaction68-rate_Reaction69+rate_Reaction70-rate_Reaction71+rate_Reaction72-rate_Reaction73+rate_Reaction74-rate_Reaction75+rate_Reaction76-rate_Reaction77+rate_Reaction78; result[2] = +rate_Reaction100-rate_Reaction101+rate_Reaction102+rate_Reaction27-rate_Reaction28+rate_Reaction29-rate_Reaction79+rate_Reaction80-rate_Reaction81+rate_Reaction82-rate_Reaction83+rate_Reaction84-rate_Reaction85+rate_Reaction86-rate_Reaction87+rate_Reaction88-rate_Reaction89+rate_Reaction90-rate_Reaction91+rate_Reaction92-rate_Reaction93+rate_Reaction94-rate_Reaction95+rate_Reaction96-rate_Reaction97+rate_Reaction98-rate_Reaction99; result[3] = -rate_Reaction103+rate_Reaction104-rate_Reaction105+rate_Reaction106-rate_Reaction107+rate_Reaction108-rate_Reaction121+rate_Reaction122-rate_Reaction123+rate_Reaction124-rate_Reaction125+rate_Reaction126+rate_Reaction12-rate_Reaction139+rate_Reaction140-rate_Reaction141+rate_Reaction142-rate_Reaction143+rate_Reaction144-rate_Reaction157+rate_Reaction158-rate_Reaction159+rate_Reaction160-rate_Reaction161+rate_Reaction162-rate_Reaction7+rate_Reaction8; result[4] = -rate_Reaction109-rate_Reaction10+rate_Reaction110-rate_Reaction111+rate_Reaction112-rate_Reaction113+rate_Reaction114+rate_Reaction11-rate_Reaction127+rate_Reaction128-rate_Reaction129+rate_Reaction130-rate_Reaction131+rate_Reaction132-rate_Reaction13-rate_Reaction145+rate_Reaction146-rate_Reaction147+rate_Reaction148-rate_Reaction149+rate_Reaction14+rate_Reaction150-rate_Reaction163+rate_Reaction164-rate_Reaction165+rate_Reaction166-rate_Reaction167+rate_Reaction168+rate_Reaction18+rate_Reaction9; result[5] = -rate_Reaction115+rate_Reaction116-rate_Reaction117+rate_Reaction118-rate_Reaction119+rate_Reaction120-rate_Reaction133+rate_Reaction134-rate_Reaction135+rate_Reaction136-rate_Reaction137+rate_Reaction138-rate_Reaction151+rate_Reaction152-rate_Reaction153+rate_Reaction154-rate_Reaction155+rate_Reaction156+rate_Reaction15-rate_Reaction169-rate_Reaction16+rate_Reaction170-rate_Reaction171+rate_Reaction172-rate_Reaction173+rate_Reaction174+rate_Reaction17-rate_Reaction19+rate_Reaction20+rate_Reaction21-rate_Reaction25+rate_Reaction26+rate_Reaction27; result[6] = -rate_Reaction175+rate_Reaction176-rate_Reaction179+rate_Reaction180-rate_Reaction183+rate_Reaction184-rate_Reaction187+rate_Reaction188-rate_Reaction191+rate_Reaction192-rate_Reaction195+rate_Reaction196-rate_Reaction199-rate_Reaction1+rate_Reaction200-rate_Reaction203+rate_Reaction204-rate_Reaction207+rate_Reaction208-rate_Reaction211+rate_Reaction212-rate_Reaction215+rate_Reaction216-rate_Reaction219+rate_Reaction220-rate_Reaction223+rate_Reaction224-rate_Reaction227+rate_Reaction228-rate_Reaction231+rate_Reaction232-rate_Reaction235+rate_Reaction236+rate_Reaction2+rate_Reaction6; result[7] = -rate_Reaction13+rate_Reaction14+rate_Reaction15-rate_Reaction177+rate_Reaction178-rate_Reaction181+rate_Reaction182-rate_Reaction185+rate_Reaction186-rate_Reaction189+rate_Reaction190-rate_Reaction193+rate_Reaction194-rate_Reaction197+rate_Reaction198-rate_Reaction201+rate_Reaction202-rate_Reaction205+rate_Reaction206-rate_Reaction209+rate_Reaction210-rate_Reaction213+rate_Reaction214-rate_Reaction217+rate_Reaction218-rate_Reaction221+rate_Reaction222-rate_Reaction225+rate_Reaction226-rate_Reaction229+rate_Reaction230-rate_Reaction233+rate_Reaction234-rate_Reaction237+rate_Reaction238+rate_Reaction3-rate_Reaction4+rate_Reaction5-rate_Reaction7+rate_Reaction8+rate_Reaction9; result[8] = +rate_Reaction19-rate_Reaction20-rate_Reaction21; result[9] = +rate_Reaction25-rate_Reaction26-rate_Reaction27; result[10] = +rate_Reaction7-rate_Reaction8-rate_Reaction9; result[11] = +rate_Reaction13-rate_Reaction14-rate_Reaction15; result[12] = +rate_Reaction22-rate_Reaction23-rate_Reaction24; result[13] = +rate_Reaction28-rate_Reaction29-rate_Reaction30; result[14] = +rate_Reaction10-rate_Reaction11-rate_Reaction12; result[15] = +rate_Reaction16-rate_Reaction17-rate_Reaction18; result[16] = +rate_Reaction1-rate_Reaction2-rate_Reaction3; result[17] = +rate_Reaction4-rate_Reaction5-rate_Reaction6; result[18] = -rate_Reaction22+rate_Reaction23+rate_Reaction24-rate_Reaction28+rate_Reaction29+rate_Reaction30; result[19] = -rate_Reaction10+rate_Reaction11+rate_Reaction12-rate_Reaction16+rate_Reaction17+rate_Reaction18; result[20] = -rate_Reaction1-rate_Reaction253+rate_Reaction254+rate_Reaction255-rate_Reaction256+rate_Reaction257+rate_Reaction258-rate_Reaction259+rate_Reaction260+rate_Reaction261-rate_Reaction262+rate_Reaction263+rate_Reaction264-rate_Reaction265+rate_Reaction266+rate_Reaction267-rate_Reaction268+rate_Reaction269+rate_Reaction270-rate_Reaction271+rate_Reaction272+rate_Reaction273-rate_Reaction274+rate_Reaction275+rate_Reaction276-rate_Reaction277+rate_Reaction278+rate_Reaction279-rate_Reaction280+rate_Reaction281+rate_Reaction282-rate_Reaction283+rate_Reaction284+rate_Reaction285-rate_Reaction286+rate_Reaction287+rate_Reaction288-rate_Reaction289+rate_Reaction290+rate_Reaction291-rate_Reaction292+rate_Reaction293+rate_Reaction294-rate_Reaction295+rate_Reaction296+rate_Reaction297-rate_Reaction298+rate_Reaction299+rate_Reaction2+rate_Reaction300+rate_Reaction3; result[21] = -rate_Reaction4+rate_Reaction5+rate_Reaction6; result[22] = +rate_Reaction123-rate_Reaction124+rate_Reaction195-rate_Reaction196-rate_Reaction268+rate_Reaction269+rate_Reaction39-rate_Reaction40; result[23] = +rate_Reaction125-rate_Reaction126+rate_Reaction197-rate_Reaction198-rate_Reaction247+rate_Reaction270+rate_Reaction41-rate_Reaction42; result[24] = +rate_Reaction121-rate_Reaction122-rate_Reaction195+rate_Reaction196-rate_Reaction197+rate_Reaction198+rate_Reaction37-rate_Reaction38; result[25] = +rate_Reaction129-rate_Reaction130+rate_Reaction199-rate_Reaction200-rate_Reaction271+rate_Reaction272+rate_Reaction45-rate_Reaction46; result[26] = +rate_Reaction131-rate_Reaction132+rate_Reaction201-rate_Reaction202+rate_Reaction247-rate_Reaction248+rate_Reaction273+rate_Reaction47-rate_Reaction48; result[27] = +rate_Reaction127-rate_Reaction128-rate_Reaction199+rate_Reaction200-rate_Reaction201+rate_Reaction202+rate_Reaction43-rate_Reaction44; result[28] = +rate_Reaction135-rate_Reaction136+rate_Reaction203-rate_Reaction204-rate_Reaction240-rate_Reaction274+rate_Reaction275+rate_Reaction51-rate_Reaction52; result[29] = +rate_Reaction137-rate_Reaction138+rate_Reaction205-rate_Reaction206-rate_Reaction241+rate_Reaction248+rate_Reaction276+rate_Reaction53-rate_Reaction54; result[30] = +rate_Reaction133-rate_Reaction134-rate_Reaction203+rate_Reaction204-rate_Reaction205+rate_Reaction206-rate_Reaction239+rate_Reaction49-rate_Reaction50; result[31] = -rate_Reaction123+rate_Reaction124-rate_Reaction129+rate_Reaction130-rate_Reaction135+rate_Reaction136+rate_Reaction191-rate_Reaction192-rate_Reaction265+rate_Reaction266+rate_Reaction33-rate_Reaction34; result[32] = -rate_Reaction125+rate_Reaction126-rate_Reaction131+rate_Reaction132-rate_Reaction137+rate_Reaction138+rate_Reaction193-rate_Reaction194+rate_Reaction267+rate_Reaction35-rate_Reaction36; result[33] = -rate_Reaction121+rate_Reaction122-rate_Reaction127+rate_Reaction128-rate_Reaction133+rate_Reaction134-rate_Reaction191+rate_Reaction192-rate_Reaction193+rate_Reaction194+rate_Reaction31-rate_Reaction32; result[34] = +rate_Reaction141-rate_Reaction142+rate_Reaction211-rate_Reaction212-rate_Reaction280+rate_Reaction281+rate_Reaction63-rate_Reaction64; result[35] = +rate_Reaction143-rate_Reaction144+rate_Reaction213-rate_Reaction214-rate_Reaction249+rate_Reaction282+rate_Reaction65-rate_Reaction66; result[36] = +rate_Reaction139-rate_Reaction140-rate_Reaction211+rate_Reaction212-rate_Reaction213+rate_Reaction214+rate_Reaction61-rate_Reaction62; result[37] = +rate_Reaction147-rate_Reaction148+rate_Reaction215-rate_Reaction216-rate_Reaction283+rate_Reaction284+rate_Reaction69-rate_Reaction70; result[38] = +rate_Reaction149-rate_Reaction150+rate_Reaction217-rate_Reaction218+rate_Reaction249-rate_Reaction250+rate_Reaction285+rate_Reaction71-rate_Reaction72; result[39] = +rate_Reaction145-rate_Reaction146-rate_Reaction215+rate_Reaction216-rate_Reaction217+rate_Reaction218+rate_Reaction67-rate_Reaction68; result[40] = +rate_Reaction153-rate_Reaction154+rate_Reaction219-rate_Reaction220+rate_Reaction240-rate_Reaction243-rate_Reaction286+rate_Reaction287+rate_Reaction75-rate_Reaction76; result[41] = +rate_Reaction155-rate_Reaction156+rate_Reaction221-rate_Reaction222+rate_Reaction241-rate_Reaction244+rate_Reaction250+rate_Reaction288+rate_Reaction77-rate_Reaction78; result[42] = +rate_Reaction151-rate_Reaction152-rate_Reaction219+rate_Reaction220-rate_Reaction221+rate_Reaction222+rate_Reaction239-rate_Reaction242+rate_Reaction73-rate_Reaction74; result[43] = -rate_Reaction141+rate_Reaction142-rate_Reaction147+rate_Reaction148-rate_Reaction153+rate_Reaction154+rate_Reaction207-rate_Reaction208-rate_Reaction277+rate_Reaction278+rate_Reaction57-rate_Reaction58; result[44] = -rate_Reaction143+rate_Reaction144-rate_Reaction149+rate_Reaction150-rate_Reaction155+rate_Reaction156+rate_Reaction209-rate_Reaction210+rate_Reaction279+rate_Reaction59-rate_Reaction60; result[45] = -rate_Reaction139+rate_Reaction140-rate_Reaction145+rate_Reaction146-rate_Reaction151+rate_Reaction152-rate_Reaction207+rate_Reaction208-rate_Reaction209+rate_Reaction210+rate_Reaction55-rate_Reaction56; result[46] = +rate_Reaction159-rate_Reaction160+rate_Reaction227-rate_Reaction228-rate_Reaction292+rate_Reaction293+rate_Reaction87-rate_Reaction88; result[47] = +rate_Reaction161-rate_Reaction162+rate_Reaction229-rate_Reaction230-rate_Reaction251+rate_Reaction294+rate_Reaction89-rate_Reaction90; result[48] = +rate_Reaction157-rate_Reaction158-rate_Reaction227+rate_Reaction228-rate_Reaction229+rate_Reaction230+rate_Reaction85-rate_Reaction86; result[49] = +rate_Reaction165-rate_Reaction166+rate_Reaction231-rate_Reaction232-rate_Reaction295+rate_Reaction296+rate_Reaction93-rate_Reaction94; result[50] = +rate_Reaction167-rate_Reaction168+rate_Reaction233-rate_Reaction234+rate_Reaction251-rate_Reaction252+rate_Reaction297+rate_Reaction95-rate_Reaction96; result[51] = +rate_Reaction163-rate_Reaction164-rate_Reaction231+rate_Reaction232-rate_Reaction233+rate_Reaction234+rate_Reaction91-rate_Reaction92; result[52] = -rate_Reaction100+rate_Reaction171-rate_Reaction172+rate_Reaction235-rate_Reaction236+rate_Reaction243-rate_Reaction298+rate_Reaction299+rate_Reaction99; result[53] = +rate_Reaction101-rate_Reaction102+rate_Reaction173-rate_Reaction174+rate_Reaction237-rate_Reaction238+rate_Reaction244+rate_Reaction252+rate_Reaction300; result[54] = +rate_Reaction169-rate_Reaction170-rate_Reaction235+rate_Reaction236-rate_Reaction237+rate_Reaction238+rate_Reaction242+rate_Reaction97-rate_Reaction98; result[55] = -rate_Reaction159+rate_Reaction160-rate_Reaction165+rate_Reaction166-rate_Reaction171+rate_Reaction172+rate_Reaction223-rate_Reaction224-rate_Reaction289+rate_Reaction290+rate_Reaction81-rate_Reaction82; result[56] = -rate_Reaction161+rate_Reaction162-rate_Reaction167+rate_Reaction168-rate_Reaction173+rate_Reaction174+rate_Reaction225-rate_Reaction226+rate_Reaction291+rate_Reaction83-rate_Reaction84; result[57] = -rate_Reaction157+rate_Reaction158-rate_Reaction163+rate_Reaction164-rate_Reaction169+rate_Reaction170-rate_Reaction223+rate_Reaction224-rate_Reaction225+rate_Reaction226+rate_Reaction79-rate_Reaction80; result[58] = +rate_Reaction268-rate_Reaction269-rate_Reaction270; result[59] = +rate_Reaction271-rate_Reaction272-rate_Reaction273; result[60] = +rate_Reaction274-rate_Reaction275-rate_Reaction276; result[61] = +rate_Reaction265-rate_Reaction266-rate_Reaction267; result[62] = +rate_Reaction280-rate_Reaction281-rate_Reaction282; result[63] = +rate_Reaction283-rate_Reaction284-rate_Reaction285; result[64] = +rate_Reaction286-rate_Reaction287-rate_Reaction288; result[65] = +rate_Reaction277-rate_Reaction278-rate_Reaction279; result[66] = +rate_Reaction292-rate_Reaction293-rate_Reaction294; result[67] = +rate_Reaction295-rate_Reaction296-rate_Reaction297; result[68] = +rate_Reaction298-rate_Reaction299-rate_Reaction300; result[69] = +rate_Reaction289-rate_Reaction290-rate_Reaction291; result[70] = +rate_Reaction256-rate_Reaction257-rate_Reaction258; result[71] = +rate_Reaction259-rate_Reaction260-rate_Reaction261; result[72] = +rate_Reaction262-rate_Reaction263-rate_Reaction264; result[73] = +rate_Reaction253-rate_Reaction254-rate_Reaction255; result[74] = +rate_Reaction105-rate_Reaction106+rate_Reaction179-rate_Reaction180-rate_Reaction256+rate_Reaction257-rate_Reaction39+rate_Reaction40-rate_Reaction63+rate_Reaction64-rate_Reaction87+rate_Reaction88; result[75] = +rate_Reaction107-rate_Reaction108+rate_Reaction181-rate_Reaction182-rate_Reaction245+rate_Reaction258-rate_Reaction41+rate_Reaction42-rate_Reaction65+rate_Reaction66-rate_Reaction89+rate_Reaction90; result[76] = +rate_Reaction103-rate_Reaction104-rate_Reaction179+rate_Reaction180-rate_Reaction181+rate_Reaction182-rate_Reaction37+rate_Reaction38-rate_Reaction61+rate_Reaction62-rate_Reaction85+rate_Reaction86; result[77] = +rate_Reaction111-rate_Reaction112+rate_Reaction183-rate_Reaction184-rate_Reaction259+rate_Reaction260-rate_Reaction45+rate_Reaction46-rate_Reaction69+rate_Reaction70-rate_Reaction93+rate_Reaction94; result[78] = +rate_Reaction113-rate_Reaction114+rate_Reaction185-rate_Reaction186+rate_Reaction245-rate_Reaction246+rate_Reaction261-rate_Reaction47+rate_Reaction48-rate_Reaction71+rate_Reaction72-rate_Reaction95+rate_Reaction96; result[79] = +rate_Reaction109-rate_Reaction110-rate_Reaction183+rate_Reaction184-rate_Reaction185+rate_Reaction186-rate_Reaction43+rate_Reaction44-rate_Reaction67+rate_Reaction68-rate_Reaction91+rate_Reaction92; result[80] = +rate_Reaction100+rate_Reaction117-rate_Reaction118+rate_Reaction187-rate_Reaction188-rate_Reaction262+rate_Reaction263-rate_Reaction51+rate_Reaction52-rate_Reaction75+rate_Reaction76-rate_Reaction99; result[81] = -rate_Reaction101+rate_Reaction102+rate_Reaction119-rate_Reaction120+rate_Reaction189-rate_Reaction190+rate_Reaction246+rate_Reaction264-rate_Reaction53+rate_Reaction54-rate_Reaction77+rate_Reaction78; result[82] = +rate_Reaction115-rate_Reaction116-rate_Reaction187+rate_Reaction188-rate_Reaction189+rate_Reaction190-rate_Reaction49+rate_Reaction50-rate_Reaction73+rate_Reaction74-rate_Reaction97+rate_Reaction98; result[83] = -rate_Reaction105+rate_Reaction106-rate_Reaction111+rate_Reaction112-rate_Reaction117+rate_Reaction118+rate_Reaction175-rate_Reaction176-rate_Reaction253+rate_Reaction254-rate_Reaction33+rate_Reaction34-rate_Reaction57+rate_Reaction58-rate_Reaction81+rate_Reaction82; result[84] = -rate_Reaction107+rate_Reaction108-rate_Reaction113+rate_Reaction114-rate_Reaction119+rate_Reaction120+rate_Reaction177-rate_Reaction178+rate_Reaction255-rate_Reaction35+rate_Reaction36-rate_Reaction59+rate_Reaction60-rate_Reaction83+rate_Reaction84; result[85] = -rate_Reaction103+rate_Reaction104-rate_Reaction109+rate_Reaction110-rate_Reaction115+rate_Reaction116-rate_Reaction175+rate_Reaction176-rate_Reaction177+rate_Reaction178-rate_Reaction31+rate_Reaction32-rate_Reaction55+rate_Reaction56-rate_Reaction79+rate_Reaction80; } protected double [] calculateResult(double time, double[] x) { double[] result = new double[86]; __internalDyDt_0(time, x, result); return result; } public double[] dy_dt(double time, double[] x) { this.time = time; calculateRates( time,x ); return calculateResult( time,x ); } } // class ...