Test: BIOMD0000000119.xml - Ok

test: BIOMD0000000119.xml
model: xml, reaction graph
simulator engine: DormandPrince
generated code: BIOMD0000000119.java
results: CSV file
plots: plot
comparison: comparison with other simulators
status: Ok
simulation time: 0 s.

Parameters:
ZERO 1.0E-100
ATOL 1.0E-15
RTOL 1.0E-12
STEP 0.01

Reaction graph

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/publ/BIOMD0000000119.gif

Plots

Note: downloaded from http://www.ebi.ac.uk/compneur-srv/biomodels/models-main/simu/MODEL1580005336.png

Comparison with other simulators

Legend:

Text color indicates difference between values:
  -  no significant difference ( < 0.1%)
  -  small relative error ( > 0.1% and <50%)
  -  simulation results significantly differ ( >50%)

Variables: Ca 
Simulators: ByoDyn  copasi  edu.kgi.roadRunner  SBToolbox2  Oscill8 Core  SBWOdeSolver  MathSBML  BioUML 
timeresult Ca
0.0BioUML7,87000E-4
0.0ByoDyn7,87000E-4
0.0MathSBML7,87000E-4
0.0Oscill8 Core7,87000E-4
0.0SBToolbox27,87000E-4
0.0SBWOdeSolver7,87000E-4
0.0copasi7,87000E-4
0.0edu.kgi.roadRunner7,87000E-4
0.0min 7,87000E-4
0.0max 7,87000E-4
0.0mean 7,87000E-4
0.0relative error(%) 0,00
0.2BioUML7,75910E-4
0.2ByoDyn7,75910E-4
0.2MathSBML7,75910E-4
0.2Oscill8 Core7,74985E-4
0.2SBToolbox27,75911E-4
0.2SBWOdeSolver7,75910E-4
0.2copasi7,75910E-4
0.2edu.kgi.roadRunner7,75910E-4
0.2min 7,74985E-4
0.2max 7,75911E-4
0.2mean 7,75910E-4
0.2relative error(%) 0,00
0.4BioUML7,64995E-4
0.4ByoDyn7,64995E-4
0.4MathSBML7,64995E-4
0.4Oscill8 Core7,63154E-4
0.4SBToolbox27,64992E-4
0.4SBWOdeSolver7,64995E-4
0.4copasi7,64995E-4
0.4edu.kgi.roadRunner7,64995E-4
0.4min 7,63154E-4
0.4max 7,64995E-4
0.4mean 7,64995E-4
0.4relative error(%) 0,00
0.6BioUML7,54258E-4
0.6ByoDyn7,54258E-4
0.6MathSBML7,54258E-4
0.6Oscill8 Core7,51503E-4
0.6SBToolbox27,54262E-4
0.6SBWOdeSolver7,54258E-4
0.6copasi7,54258E-4
0.6edu.kgi.roadRunner7,54258E-4
0.6min 7,51503E-4
0.6max 7,54262E-4
0.6mean 7,54258E-4
0.6relative error(%) 0,00
0.8BioUML7,43701E-4
0.8ByoDyn7,43701E-4
0.8MathSBML7,43701E-4
0.8Oscill8 Core7,40029E-4
0.8SBToolbox27,43702E-4
0.8SBWOdeSolver7,43701E-4
0.8copasi7,43701E-4
0.8edu.kgi.roadRunner7,43701E-4
0.8min 7,40029E-4
0.8max 7,43702E-4
0.8mean 7,43701E-4
0.8relative error(%) 0,00
1.0BioUML7,33325E-4
1.0ByoDyn7,33325E-4
1.0MathSBML7,33325E-4
1.0Oscill8 Core7,28732E-4
1.0SBToolbox27,33322E-4
1.0SBWOdeSolver7,33325E-4
1.0copasi7,33325E-4
1.0edu.kgi.roadRunner7,33325E-4
1.0min 7,28732E-4
1.0max 7,33325E-4
1.0mean 7,33325E-4
1.0relative error(%) 0,00
1.2BioUML7,23130E-4
1.2ByoDyn7,23130E-4
1.2MathSBML7,23130E-4
1.2Oscill8 Core7,17606E-4
1.2SBToolbox27,23130E-4
1.2SBWOdeSolver7,23130E-4
1.2copasi7,23130E-4
1.2edu.kgi.roadRunner7,23130E-4
1.2min 7,17606E-4
1.2max 7,23130E-4
1.2mean 7,23130E-4
1.2relative error(%) 0,00
1.4BioUML7,13118E-4
1.4ByoDyn7,13118E-4
1.4MathSBML7,13118E-4
1.4Oscill8 Core7,06650E-4
1.4SBToolbox27,13119E-4
1.4SBWOdeSolver7,13118E-4
1.4copasi7,13118E-4
1.4edu.kgi.roadRunner7,13118E-4
1.4min 7,06650E-4
1.4max 7,13119E-4
1.4mean 7,13118E-4
1.4relative error(%) 0,00
1.6BioUML7,03288E-4
1.6ByoDyn7,03288E-4
1.6MathSBML7,03288E-4
1.6Oscill8 Core6,95862E-4
1.6SBToolbox27,03287E-4
1.6SBWOdeSolver7,03288E-4
1.6copasi7,03288E-4
1.6edu.kgi.roadRunner7,03288E-4
1.6min 6,95862E-4
1.6max 7,03288E-4
1.6mean 7,03288E-4
1.6relative error(%) 0,00
1.8BioUML6,93640E-4
1.8ByoDyn6,93640E-4
1.8MathSBML6,93640E-4
1.8Oscill8 Core6,85238E-4
1.8SBToolbox26,93636E-4
1.8SBWOdeSolver6,93640E-4
1.8copasi6,93640E-4
1.8edu.kgi.roadRunner6,93640E-4
1.8min 6,85238E-4
1.8max 6,93640E-4
1.8mean 6,93640E-4
1.8relative error(%) 0,00
2.0BioUML6,84172E-4
2.0ByoDyn6,84172E-4
2.0MathSBML6,84172E-4
2.0Oscill8 Core6,74777E-4
2.0SBToolbox26,84164E-4
2.0SBWOdeSolver6,84172E-4
2.0copasi6,84172E-4
2.0edu.kgi.roadRunner6,84172E-4
2.0min 6,74777E-4
2.0max 6,84172E-4
2.0mean 6,84172E-4
2.0relative error(%) 0,00
2.2BioUML6,74884E-4
2.2ByoDyn6,74884E-4
2.2MathSBML6,74885E-4
2.2Oscill8 Core6,64475E-4
2.2SBToolbox26,74881E-4
2.2SBWOdeSolver6,74884E-4
2.2copasi6,74884E-4
2.2edu.kgi.roadRunner6,74884E-4
2.2min 6,64475E-4
2.2max 6,74885E-4
2.2mean 6,74884E-4
2.2relative error(%) 0,00
2.4BioUML6,65776E-4
2.4ByoDyn6,65776E-4
2.4MathSBML6,65776E-4
2.4Oscill8 Core6,54331E-4
2.4SBToolbox26,65768E-4
2.4SBWOdeSolver6,65776E-4
2.4copasi6,65776E-4
2.4edu.kgi.roadRunner6,65776E-4
2.4min 6,54331E-4
2.4max 6,65776E-4
2.4mean 6,65776E-4
2.4relative error(%) 0,00
2.6BioUML6,56846E-4
2.6ByoDyn6,56846E-4
2.6MathSBML6,56846E-4
2.6Oscill8 Core6,44341E-4
2.6SBToolbox26,56834E-4
2.6SBWOdeSolver6,56846E-4
2.6copasi6,56846E-4
2.6edu.kgi.roadRunner6,56846E-4
2.6min 6,44341E-4
2.6max 6,56846E-4
2.6mean 6,56846E-4
2.6relative error(%) 0,00
2.8BioUML6,48092E-4
2.8ByoDyn6,48092E-4
2.8MathSBML6,48092E-4
2.8Oscill8 Core6,34504E-4
2.8SBToolbox26,48080E-4
2.8SBWOdeSolver6,48092E-4
2.8copasi6,48092E-4
2.8edu.kgi.roadRunner6,48092E-4
2.8min 6,34504E-4
2.8max 6,48092E-4
2.8mean 6,48092E-4
2.8relative error(%) 0,00
3.0BioUML6,39514E-4
3.0ByoDyn6,39514E-4
3.0MathSBML6,39514E-4
3.0Oscill8 Core6,24817E-4
3.0SBToolbox26,39496E-4
3.0SBWOdeSolver6,39514E-4
3.0copasi6,39514E-4
3.0edu.kgi.roadRunner6,39514E-4
3.0min 6,24817E-4
3.0max 6,39514E-4
3.0mean 6,39514E-4
3.0relative error(%) 0,00
3.2BioUML6,31110E-4
3.2ByoDyn6,31110E-4
3.2MathSBML6,31110E-4
3.2Oscill8 Core6,15278E-4
3.2SBToolbox26,31091E-4
3.2SBWOdeSolver6,31110E-4
3.2copasi6,31110E-4
3.2edu.kgi.roadRunner6,31110E-4
3.2min 6,15278E-4
3.2max 6,31110E-4
3.2mean 6,31110E-4
3.2relative error(%) 0,00
3.4BioUML6,22879E-4
3.4ByoDyn6,22879E-4
3.4MathSBML6,22879E-4
3.4Oscill8 Core6,05885E-4
3.4SBToolbox26,22859E-4
3.4SBWOdeSolver6,22879E-4
3.4copasi6,22879E-4
3.4edu.kgi.roadRunner6,22879E-4
3.4min 6,05885E-4
3.4max 6,22879E-4
3.4mean 6,22879E-4
3.4relative error(%) 0,00
3.6BioUML6,14819E-4
3.6ByoDyn6,14819E-4
3.6MathSBML6,14819E-4
3.6Oscill8 Core5,96635E-4
3.6SBToolbox26,14794E-4
3.6SBWOdeSolver6,14819E-4
3.6copasi6,14819E-4
3.6edu.kgi.roadRunner6,14819E-4
3.6min 5,96635E-4
3.6max 6,14819E-4
3.6mean 6,14819E-4
3.6relative error(%) 0,00
3.8BioUML6,06930E-4
3.8ByoDyn6,06930E-4
3.8MathSBML6,06930E-4
3.8Oscill8 Core5,87526E-4
3.8SBToolbox26,06898E-4
3.8SBWOdeSolver6,06930E-4
3.8copasi6,06930E-4
3.8edu.kgi.roadRunner6,06930E-4
3.8min 5,87526E-4
3.8max 6,06930E-4
3.8mean 6,06930E-4
3.8relative error(%) 0,00
4.0BioUML5,99209E-4
4.0ByoDyn5,99209E-4
4.0MathSBML5,99209E-4
4.0Oscill8 Core5,78556E-4
4.0SBToolbox25,99172E-4
4.0SBWOdeSolver5,99209E-4
4.0copasi5,99209E-4
4.0edu.kgi.roadRunner5,99209E-4
4.0min 5,78556E-4
4.0max 5,99209E-4
4.0mean 5,99209E-4
4.0relative error(%) 0,00
4.2BioUML5,91655E-4
4.2ByoDyn5,91655E-4
4.2MathSBML5,91655E-4
4.2Oscill8 Core5,69724E-4
4.2SBToolbox25,91620E-4
4.2SBWOdeSolver5,91655E-4
4.2copasi5,91655E-4
4.2edu.kgi.roadRunner5,91655E-4
4.2min 5,69724E-4
4.2max 5,91655E-4
4.2mean 5,91655E-4
4.2relative error(%) 0,00
4.4BioUML5,84266E-4
4.4ByoDyn5,84266E-4
4.4MathSBML5,84266E-4
4.4Oscill8 Core5,61026E-4
4.4SBToolbox25,84228E-4
4.4SBWOdeSolver5,84266E-4
4.4copasi5,84266E-4
4.4edu.kgi.roadRunner5,84266E-4
4.4min 5,61026E-4
4.4max 5,84266E-4
4.4mean 5,84266E-4
4.4relative error(%) 0,00
4.6BioUML5,77042E-4
4.6ByoDyn5,77042E-4
4.6MathSBML5,77042E-4
4.6Oscill8 Core5,52461E-4
4.6SBToolbox25,77001E-4
4.6SBWOdeSolver5,77042E-4
4.6copasi5,77042E-4
4.6edu.kgi.roadRunner5,77042E-4
4.6min 5,52461E-4
4.6max 5,77042E-4
4.6mean 5,77042E-4
4.6relative error(%) 0,00
4.8BioUML5,69981E-4
4.8ByoDyn5,69981E-4
4.8MathSBML5,69981E-4
4.8Oscill8 Core5,44026E-4
4.8SBToolbox25,69938E-4
4.8SBWOdeSolver5,69981E-4
4.8copasi5,69981E-4
4.8edu.kgi.roadRunner5,69981E-4
4.8min 5,44026E-4
4.8max 5,69981E-4
4.8mean 5,69981E-4
4.8relative error(%) 0,00
5.0BioUML5,63081E-4
5.0ByoDyn5,63081E-4
5.0MathSBML5,63081E-4
5.0Oscill8 Core5,35721E-4
5.0SBToolbox25,63030E-4
5.0SBWOdeSolver5,63081E-4
5.0copasi5,63081E-4
5.0edu.kgi.roadRunner5,63081E-4
5.0min 5,35721E-4
5.0max 5,63081E-4
5.0mean 5,63081E-4
5.0relative error(%) 0,00
5.2BioUML5,56341E-4
5.2ByoDyn5,56341E-4
5.2MathSBML5,56341E-4
5.2Oscill8 Core5,27542E-4
5.2SBToolbox25,56292E-4
5.2SBWOdeSolver5,56341E-4
5.2copasi5,56341E-4
5.2edu.kgi.roadRunner5,56341E-4
5.2min 5,27542E-4
5.2max 5,56341E-4
5.2mean 5,56341E-4
5.2relative error(%) 0,00
5.4BioUML5,49760E-4
5.4ByoDyn5,49760E-4
5.4MathSBML5,49760E-4
5.4Oscill8 Core5,19488E-4
5.4SBToolbox25,49708E-4
5.4SBWOdeSolver5,49760E-4
5.4copasi5,49760E-4
5.4edu.kgi.roadRunner5,49760E-4
5.4min 5,19488E-4
5.4max 5,49760E-4
5.4mean 5,49760E-4
5.4relative error(%) 0,00
5.6BioUML5,43335E-4
5.6ByoDyn5,43335E-4
5.6MathSBML5,43336E-4
5.6Oscill8 Core5,11557E-4
5.6SBToolbox25,43279E-4
5.6SBWOdeSolver5,43336E-4
5.6copasi5,43335E-4
5.6edu.kgi.roadRunner5,43335E-4
5.6min 5,11557E-4
5.6max 5,43336E-4
5.6mean 5,43335E-4
5.6relative error(%) 0,00
5.8BioUML5,37067E-4
5.8ByoDyn5,37067E-4
5.8MathSBML5,37067E-4
5.8Oscill8 Core5,03747E-4
5.8SBToolbox25,37000E-4
5.8SBWOdeSolver5,37067E-4
5.8copasi5,37067E-4
5.8edu.kgi.roadRunner5,37067E-4
5.8min 5,03747E-4
5.8max 5,37067E-4
5.8mean 5,37067E-4
5.8relative error(%) 0,00
6.0BioUML5,30952E-4
6.0ByoDyn5,30952E-4
6.0MathSBML5,30952E-4
6.0Oscill8 Core4,96057E-4
6.0SBToolbox25,30886E-4
6.0SBWOdeSolver5,30952E-4
6.0copasi5,30952E-4
6.0edu.kgi.roadRunner5,30952E-4
6.0min 4,96057E-4
6.0max 5,30952E-4
6.0mean 5,30952E-4
6.0relative error(%) 0,00
6.2BioUML5,24991E-4
6.2ByoDyn5,24991E-4
6.2MathSBML5,24991E-4
6.2Oscill8 Core4,88483E-4
6.2SBToolbox25,24920E-4
6.2SBWOdeSolver5,24991E-4
6.2copasi5,24991E-4
6.2edu.kgi.roadRunner5,24991E-4
6.2min 4,88483E-4
6.2max 5,24991E-4
6.2mean 5,24991E-4
6.2relative error(%) 0,00
6.4BioUML5,19181E-4
6.4ByoDyn5,19181E-4
6.4MathSBML5,19181E-4
6.4Oscill8 Core4,81026E-4
6.4SBToolbox25,19109E-4
6.4SBWOdeSolver5,19181E-4
6.4copasi5,19181E-4
6.4edu.kgi.roadRunner5,19181E-4
6.4min 4,81026E-4
6.4max 5,19181E-4
6.4mean 5,19181E-4
6.4relative error(%) 0,00
6.6BioUML5,13522E-4
6.6ByoDyn5,13522E-4
6.6MathSBML5,13522E-4
6.6Oscill8 Core4,73682E-4
6.6SBToolbox25,13445E-4
6.6SBWOdeSolver5,13522E-4
6.6copasi5,13522E-4
6.6edu.kgi.roadRunner5,13522E-4
6.6min 4,73682E-4
6.6max 5,13522E-4
6.6mean 5,13522E-4
6.6relative error(%) 0,00
6.8BioUML5,08011E-4
6.8ByoDyn5,08011E-4
6.8MathSBML5,08011E-4
6.8Oscill8 Core4,66450E-4
6.8SBToolbox25,07930E-4
6.8SBWOdeSolver5,08011E-4
6.8copasi5,08011E-4
6.8edu.kgi.roadRunner5,08011E-4
6.8min 4,66450E-4
6.8max 5,08011E-4
6.8mean 5,08011E-4
6.8relative error(%) 0,00
7.0BioUML5,02648E-4
7.0ByoDyn5,02648E-4
7.0MathSBML5,02648E-4
7.0Oscill8 Core4,59329E-4
7.0SBToolbox25,02562E-4
7.0SBWOdeSolver5,02648E-4
7.0copasi5,02648E-4
7.0edu.kgi.roadRunner5,02648E-4
7.0min 4,59329E-4
7.0max 5,02648E-4
7.0mean 5,02648E-4
7.0relative error(%) 0,00
7.2BioUML4,97432E-4
7.2ByoDyn4,97432E-4
7.2MathSBML4,97432E-4
7.2Oscill8 Core4,52317E-4
7.2SBToolbox24,97347E-4
7.2SBWOdeSolver4,97432E-4
7.2copasi4,97432E-4
7.2edu.kgi.roadRunner4,97432E-4
7.2min 4,52317E-4
7.2max 4,97432E-4
7.2mean 4,97432E-4
7.2relative error(%) 0,00
7.4BioUML4,92360E-4
7.4ByoDyn4,92360E-4
7.4MathSBML4,92360E-4
7.4Oscill8 Core4,45411E-4
7.4SBToolbox24,92275E-4
7.4SBWOdeSolver4,92360E-4
7.4copasi4,92360E-4
7.4edu.kgi.roadRunner4,92360E-4
7.4min 4,45411E-4
7.4max 4,92360E-4
7.4mean 4,92360E-4
7.4relative error(%) 0,00
7.6BioUML4,87433E-4
7.6ByoDyn4,87433E-4
7.6MathSBML4,87433E-4
7.6Oscill8 Core4,38611E-4
7.6SBToolbox24,87340E-4
7.6SBWOdeSolver4,87433E-4
7.6copasi4,87433E-4
7.6edu.kgi.roadRunner4,87433E-4
7.6min 4,38611E-4
7.6max 4,87433E-4
7.6mean 4,87433E-4
7.6relative error(%) 0,00
7.8BioUML4,82648E-4
7.8ByoDyn4,82648E-4
7.8MathSBML4,82648E-4
7.8Oscill8 Core4,31915E-4
7.8SBToolbox24,82549E-4
7.8SBWOdeSolver4,82648E-4
7.8copasi4,82648E-4
7.8edu.kgi.roadRunner4,82648E-4
7.8min 4,31915E-4
7.8max 4,82648E-4
7.8mean 4,82648E-4
7.8relative error(%) 0,00
8.0BioUML4,78004E-4
8.0ByoDyn4,78004E-4
8.0MathSBML4,78004E-4
8.0Oscill8 Core4,25321E-4
8.0SBToolbox24,77904E-4
8.0SBWOdeSolver4,78004E-4
8.0copasi4,78004E-4
8.0edu.kgi.roadRunner4,78004E-4
8.0min 4,25321E-4
8.0max 4,78004E-4
8.0mean 4,78004E-4
8.0relative error(%) 0,00
8.2BioUML4,73501E-4
8.2ByoDyn4,73501E-4
8.2MathSBML4,73501E-4
8.2Oscill8 Core4,18828E-4
8.2SBToolbox24,73400E-4
8.2SBWOdeSolver4,73501E-4
8.2copasi4,73501E-4
8.2edu.kgi.roadRunner4,73501E-4
8.2min 4,18828E-4
8.2max 4,73501E-4
8.2mean 4,73501E-4
8.2relative error(%) 0,00
8.4BioUML4,69137E-4
8.4ByoDyn4,69137E-4
8.4MathSBML4,69137E-4
8.4Oscill8 Core4,12433E-4
8.4SBToolbox24,69035E-4
8.4SBWOdeSolver4,69137E-4
8.4copasi4,69137E-4
8.4edu.kgi.roadRunner4,69137E-4
8.4min 4,12433E-4
8.4max 4,69137E-4
8.4mean 4,69137E-4
8.4relative error(%) 0,00
8.6BioUML4,64910E-4
8.6ByoDyn4,64910E-4
8.6MathSBML4,64910E-4
8.6Oscill8 Core4,06137E-4
8.6SBToolbox24,64801E-4
8.6SBWOdeSolver4,64910E-4
8.6copasi4,64910E-4
8.6edu.kgi.roadRunner4,64910E-4
8.6min 4,06137E-4
8.6max 4,64910E-4
8.6mean 4,64910E-4
8.6relative error(%) 0,00
8.8BioUML4,60821E-4
8.8ByoDyn4,60821E-4
8.8MathSBML4,60821E-4
8.8Oscill8 Core3,99936E-4
8.8SBToolbox24,60706E-4
8.8SBWOdeSolver4,60821E-4
8.8copasi4,60821E-4
8.8edu.kgi.roadRunner4,60821E-4
8.8min 3,99936E-4
8.8max 4,60821E-4
8.8mean 4,60821E-4
8.8relative error(%) 0,00
9.0BioUML4,56867E-4
9.0ByoDyn4,56867E-4
9.0MathSBML4,56867E-4
9.0Oscill8 Core3,93831E-4
9.0SBToolbox24,56751E-4
9.0SBWOdeSolver4,56867E-4
9.0copasi4,56867E-4
9.0edu.kgi.roadRunner4,56867E-4
9.0min 3,93831E-4
9.0max 4,56867E-4
9.0mean 4,56867E-4
9.0relative error(%) 0,00
9.2BioUML4,53048E-4
9.2ByoDyn4,53048E-4
9.2MathSBML4,53048E-4
9.2Oscill8 Core3,87818E-4
9.2SBToolbox24,52935E-4
9.2SBWOdeSolver4,53048E-4
9.2copasi4,53048E-4
9.2edu.kgi.roadRunner4,53048E-4
9.2min 3,87818E-4
9.2max 4,53048E-4
9.2mean 4,53048E-4
9.2relative error(%) 0,00
9.4BioUML4,49362E-4
9.4ByoDyn4,49362E-4
9.4MathSBML4,49362E-4
9.4Oscill8 Core3,81897E-4
9.4SBToolbox24,49239E-4
9.4SBWOdeSolver4,49362E-4
9.4copasi4,49362E-4
9.4edu.kgi.roadRunner4,49362E-4
9.4min 3,81897E-4
9.4max 4,49362E-4
9.4mean 4,49362E-4
9.4relative error(%) 0,00
9.6BioUML4,45809E-4
9.6ByoDyn4,45809E-4
9.6MathSBML4,45809E-4
9.6Oscill8 Core3,76067E-4
9.6SBToolbox24,45683E-4
9.6SBWOdeSolver4,45809E-4
9.6copasi4,45809E-4
9.6edu.kgi.roadRunner4,45809E-4
9.6min 3,76067E-4
9.6max 4,45809E-4
9.6mean 4,45809E-4
9.6relative error(%) 0,00
9.8BioUML4,42386E-4
9.8ByoDyn4,42387E-4
9.8MathSBML4,42387E-4
9.8Oscill8 Core3,70325E-4
9.8SBToolbox24,42257E-4
9.8SBWOdeSolver4,42387E-4
9.8copasi4,42387E-4
9.8edu.kgi.roadRunner4,42387E-4
9.8min 3,70325E-4
9.8max 4,42387E-4
9.8mean 4,42387E-4
9.8relative error(%) 0,00